New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5265857	44 (0.740)	3 (0.050)	3/246	NT	6.1%	coding (755/2067 nt)	yjiY	putative transporter
	?	NC_002947	= 5265887	50 (0.880)					coding (725/2067 nt)	yjiY	putative transporter

CGATGGCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGA  >  NC_002947/5265714‑5266004                                                                                                                                                 |                                                                                                                                                    cGATGGCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGcc                                                                                                                                                >  5:305453/1‑149 (MQ=255) cGATGGCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGcc                                                                                                                                                >  8:265713/1‑149 (MQ=255) cGATGGCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGcc                                                                                                                                                <  6:295100/149‑1 (MQ=255)  gATGTCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCg                                                                                                                                               <  8:302765/149‑1 (MQ=255)       ccaggccaAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGccc                                                                                                                                          <  8:119129/149‑1 (MQ=255)                      tGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCg                                                                                                                             >  6:367094/1‑147 (MQ=255)                             cTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGAtca                                                                                                                    <  5:55467‑M2/149‑4 (MQ=255)                                gAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCg                                                                                                                        <  1:364007/142‑1 (MQ=255)                                gAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgc                                                                                                                 >  3:264165/1‑149 (MQ=255)                                 aGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGTCACGCCGGTGAACGTGAtcgctgcggacccggtgtggggcccggcgttcacgt                                                                                                                 <  1:99193‑M1/149‑37 (MQ=255)                                 aGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgcc                                                                                                                <  6:305453/149‑1 (MQ=255)                                 aGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgc                                                                                                                 <  3:41994/148‑1 (MQ=255)                                              ggTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATc                                                                                                   <  6:161488/149‑1 (MQ=255)                                                  gTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAgg                                                                                               >  6:283169/1‑149 (MQ=255)                                                     aCGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGc                                                                                              >  4:115022/1‑147 (MQ=255)                                                        cggcgCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                           >  1:229970/1‑147 (MQ=255)                                                          gcgcCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcagc                                                                                       <  3:254958/149‑1 (MQ=255)                                                                 cACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACca                                                                                >  2:341820/1‑149 (MQ=255)                                                                   ccAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACcaca                                                                              >  8:139128/1‑149 (MQ=255)                                                                           acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcag                                                                                        <  5:194594/131‑1 (MQ=255)                                                                           acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcag                                                                                        >  6:194594/1‑131 (MQ=255)                                                                           acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCca                                                                                            >  6:37568/1‑127 (MQ=255)                                                                           acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCca                                                                                            <  5:37568/127‑1 (MQ=255)                                                                             tGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGAcc                                                                     >  6:49836/1‑148 (MQ=255)                                                                                cagcaCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCgaga                                                                 <  3:115022/149‑1 (MQ=255)                                                                                    aCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTc                                                             >  4:164573/1‑149 (MQ=255)                                                                                    aCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTc                                                             <  6:55467/149‑1 (MQ=255)                                                                                           cgACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGTGATTTCGCCAATa                                                      <  7:265713/149‑1 (MQ=255)                                                                                           cgACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATa                                                      <  4:264165/149‑1 (MQ=255)                                                                                            gACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCa                                                                           >  4:205335/1‑127 (MQ=255)                                                                                            gACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCa                                                                           <  3:205335/127‑1 (MQ=255)                                                                                               aaaaCCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAtcgctgcggacccggtgtggggcccggcgttc                                                                                                                     >  4:210884‑M1/1‑50 (MQ=255)                                                                                               aaaaCCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAtcgctgcggacccggtgtggggcccggcgttc                                                                                                                     <  3:210884‑M1/82‑33 (MQ=255)                                                                                               aaaaCCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagca                                                                                         >  4:27256/1‑110 (MQ=255)                                                                                               aaaaCCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagca                                                                                         <  3:27256/110‑1 (MQ=255)                                                                                               aaaaCCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGc                                                  >  2:76620/1‑149 (MQ=255)                                                                                                      tAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcggacg                                           <  5:49836/149‑1 (MQ=255)                                                                                                             ccaGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCAGCATCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAg                                    <  5:367094/149‑1 (MQ=255)                                                                                                                     cAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACCCCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGCATGTAGCGCATg                              >  7:260173/1‑147 (MQ=255)                                                                                                                      aGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGt                             <  4:108490/147‑1 (MQ=255)                                                                                                                      aGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGt                             >  3:108490/1‑147 (MQ=255)                                                                                                                      aGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                           <  2:229970/149‑1 (MQ=255)                                                                                                                              tG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGAt                                        >  8:115730/1‑128 (MQ=255)                                                                                                                              tG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGAt                                        <  7:115730/128‑1 (MQ=255)                                                                                                                               g‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCAt                   >  3:225352/1‑148 (MQ=255)                                                                                                                                 cACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                           <  5:143327/139‑1 (MQ=255)                                                                                                                                 cACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                           >  6:143327/1‑139 (MQ=255)                                                                                                                                     ccGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACAt             <  1:341820/149‑1 (MQ=255)                                                                                                                                        gtgaacgtgaacGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATcgc          <  5:283169/149‑1 (MQ=255)                                                                                                                                        gtgaacgtgaacGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATcgc          <  4:225352/149‑1 (MQ=255)                                                                                                                                            acgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgacagatcacctggatgctggtgggctacggttttgtcgccgccgtgctgccagtgtggctggtgctggcgccgcgtgactacctgtcgaccttcct      <  1:99193‑M2/149‑114 (MQ=255)                                                                                                                                            acgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATc      <  3:164573/149‑1 (MQ=255)                                                                                                                                             cgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcgga                                             <  2:376229/109‑1 (MQ=255)                                                                                                                                             cgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcgga                                             >  1:376229/1‑109 (MQ=255)                                                                                                                                              gtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATg                              >  2:349317/1‑123 (MQ=255)                                                                                                                                              gtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATg                              <  1:349317/123‑1 (MQ=255)                                                                                                                                               tGAtcgctgcggacccggtgtggggcccggcgttcacgttcaccggcgtgcagatcacctggatgctggtgggctacggttttgtcgccgccgtgctgccagtgtggctggtgctggcgccgcgtgactacctgtcgaccttcctcaag   <  5:55467‑M1/149‑147 (MQ=255)                                                                                                                                                gaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgcagatcacctggatgctggtgggctacggtttt                                                                     <  3:210884‑M2/82‑51 (MQ=255)                                                                                                                                                gaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgcagatcacctggatgctggtgggctacggtttt                                                                     >  4:210884‑M2/1‑32 (MQ=255)                                                                                                                                                gaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                           <  6:273796/60‑1 (MQ=255)                                                                                                                                                gaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                           >  5:273796/1‑60 (MQ=255)                                                                                                                                                 aacgCCGTGCCCCACACCGGGTCCGCATCGATCACGCCGCCCAGCCAGATCGAGGCCAGGAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCTTTCGGGa  <  8:260173/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    CGATGGCCAGGCCAAGGATCGTGCCGATCTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTG‑CACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGA  >  NC_002947/5265714‑5266004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.