New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5265857	44 (0.740)	3 (0.050)	3/246	NT	6.1%	coding (755/2067 nt)	yjiY	putative transporter
	?	NC_002947	= 5265887	50 (0.880)					coding (725/2067 nt)	yjiY	putative transporter

CTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCGTGAACATGCCCCAT  >  NC_002947/5265742‑5266033                                                                                                                                                  |                                                                                                                                                   cTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGAtca                                                                                                                                                 <  5:55467‑M2/149‑4 (MQ=255)    gAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgc                                                                                                                                              >  3:264165/1‑149 (MQ=255)     aGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgcc                                                                                                                                             <  6:305453/149‑1 (MQ=255)     aGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCAcgc                                                                                                                                              <  3:41994/148‑1 (MQ=255)                  ggTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATc                                                                                                                                <  6:161488/149‑1 (MQ=255)                      gTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAgg                                                                                                                            >  6:283169/1‑149 (MQ=255)                         aCGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGc                                                                                                                           >  4:115022/1‑147 (MQ=255)                            cggcgCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                                                        >  1:229970/1‑147 (MQ=255)                              gcgcCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcagc                                                                                                                    <  3:254958/149‑1 (MQ=255)                                     cACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACca                                                                                                             >  2:341820/1‑149 (MQ=255)                                       ccAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACcaca                                                                                                           >  8:139128/1‑149 (MQ=255)                                               acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcag                                                                                                                     <  5:194594/131‑1 (MQ=255)                                               acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagcag                                                                                                                     >  6:194594/1‑131 (MQ=255)                                               acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCca                                                                                                                         <  5:37568/127‑1 (MQ=255)                                               acTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCca                                                                                                                         >  6:37568/1‑127 (MQ=255)                                                 tGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGAcc                                                                                                  >  6:49836/1‑148 (MQ=255)                                                    cagcaCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCgaga                                                                                              <  3:115022/149‑1 (MQ=255)                                                        aCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTc                                                                                          <  6:55467/149‑1 (MQ=255)                                                        aCGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTc                                                                                          >  4:164573/1‑149 (MQ=255)                                                               cgACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGTGATTTCGCCAATa                                                                                   <  7:265713/149‑1 (MQ=255)                                                               cgACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATa                                                                                   <  4:264165/149‑1 (MQ=255)                                                                gACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCa                                                                                                        <  3:205335/127‑1 (MQ=255)                                                                gACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCa                                                                                                        >  4:205335/1‑127 (MQ=255)                                                                   aaaaCCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagca                                                                                                                      <  3:27256/110‑1 (MQ=255)                                                                   aaaaCCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcagca                                                                                                                      >  4:27256/1‑110 (MQ=255)                                                                   aaaaCCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGc                                                                               >  2:76620/1‑149 (MQ=255)                                                                          tAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcggacg                                                                        <  5:49836/149‑1 (MQ=255)                                                                                 ccaGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCAGCATCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAg                                                                 <  5:367094/149‑1 (MQ=255)                                                                                         cAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACCCCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGCATGTAGCGCATg                                                           >  7:260173/1‑147 (MQ=255)                                                                                          aGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGt                                                          <  4:108490/147‑1 (MQ=255)                                                                                          aGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGt                                                          >  3:108490/1‑147 (MQ=255)                                                                                          aGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                                                        <  2:229970/149‑1 (MQ=255)                                                                                                  tGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGAt                                                                     <  7:115730/128‑1 (MQ=255)                                                                                                  tGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGAt                                                                     >  8:115730/1‑128 (MQ=255)                                                                                                   gCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCAt                                                >  3:225352/1‑148 (MQ=255)                                                                                                    cACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                                                        <  5:143327/139‑1 (MQ=255)                                                                                                    cACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAg                                                        >  6:143327/1‑139 (MQ=255)                                                                                                        ccGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACAt                                          <  1:341820/149‑1 (MQ=255)                                                                                                           gtgaacgtgaacGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATcgc                                       <  5:283169/149‑1 (MQ=255)                                                                                                           gtgaacgtgaacGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATcgc                                       <  4:225352/149‑1 (MQ=255)                                                                                                               acgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgacagatcacctggatgctggtgggctacggttttgtcgccgccgtgctgccagtgtggctggtgctggcgccgcgtgactacctgtcgaccttcct                                   <  1:99193‑M2/149‑114 (MQ=255)                                                                                                               acgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATc                                   <  3:164573/149‑1 (MQ=255)                                                                                                                cgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcgga                                                                          >  1:376229/1‑109 (MQ=255)                                                                                                                cgtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCcgga                                                                          <  2:376229/109‑1 (MQ=255)                                                                                                                 gtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATg                                                           <  1:349317/123‑1 (MQ=255)                                                                                                                 gtgaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATg                                                           >  2:349317/1‑123 (MQ=255)                                                                                                                   gaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgcagatcacctggatgctggtgggctacggtttt                                                                                                  >  4:210884‑M2/1‑32 (MQ=255)                                                                                                                   gaacgCCGGGCCCCACACCGGGTCCGCAGCGAtcacgttcaccggcgtgcagatcacctggatgctggtgggctacggtttt                                                                                                  <  3:210884‑M2/82‑51 (MQ=255)                                                                                                                   gaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                                                        >  5:273796/1‑60 (MQ=255)                                                                                                                   gaacgCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCcag                                                                                                                        <  6:273796/60‑1 (MQ=255)                                                                                                                    aacgCCGTGCCCCACACCGGGTCCGCATCGATCACGCCGCCCAGCCAGATCGAGGCCAGGAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCTTTCGGGa                               <  8:260173/148‑1 (MQ=255)                                                                                                                       gCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGt                           >  6:385839/1‑149 (MQ=255)                                                                                                                          gggCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGc                        >  7:51847/1‑149 (MQ=255)                                                                                                                           ggCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGcc                       <  7:139128/149‑1 (MQ=255)                                                                                                                                  cacCGGGTCCACAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGAACGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCg                >  2:58297/1‑149 (MQ=255)                                                                                                                                   acCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCGt               >  2:14673/1‑149 (MQ=255)                                                                                                                                        gTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCGTGAACa          >  7:162226/1‑149 (MQ=255)                                                                                                                                                cGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCGTGAACATGCCCCAt  <  8:51847/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                   CTTGAGGAAGGTCGACAGGTAGTCACGCGGCGCCAGCACCAGCCACACTGGCAGCACGGCGGCGACAAAACCGTAGCCCACCAGCATCCAGGTGATCTGCACGCCGGTGAACGTGAACGCCGGGCCCCACACCGGGTCCGCAGCGATCACGCCGCCCAGCCAGATCGAGGCCAGCAGCAGTACCACACCAACGACCGAGATTTCGCCAATACGGCCCGGACGGATGTAGCGCATGTAGATGCCCATGAACATCGCGATCGGGATGGTCGCCATCACCGTGAACATGCCCCAT  >  NC_002947/5265742‑5266033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.