New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5588328 =82 (1.390)4 (0.070) 4/242 NT 5.4% coding (820/1905 nt) parE DNA topoisomerase IV subunit B
?NC_002947 5588393 = 62 (1.110)coding (755/1905 nt) parE DNA topoisomerase IV subunit B

ACGAAGGTGATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGACCGAGTCGACCAGGTAG  >  NC_002947/5588180‑5588473
                                                                                                                                                    |                                                                                                                                                  
tggtcagtttcgaggacaaggccagcggcgaaaaggtggaatggcactatgaggatggtctgcgctcctacctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcg                                                                                                                                                    <  4:240827‑M1/1‑1 (MQ=255)
 cGAAGGTGATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAgg                                                                                                                                                   <  2:146389/149‑1 (MQ=255)
  gtcagtttcgaggacatggccagcggcgaaaaggtggaatggcactatgaggatggtctgcgctcctacctggtcgactctgtctacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcgg                                                                                                                                                   >  2:221758‑M1/147‑148 (MQ=255)
  gtcagtttcgaggacaaggccagcggcgaaaaggtggaatggcactatgaggatggtctgcgctcctacctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcGGt                                                                                                                                                  <  1:73154‑M1/3‑1 (MQ=255)
     ggTGATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCATGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGa                                                                                                                                               >  3:302983/1‑149 (MQ=255)
     ggTGATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGa                                                                                                                                               >  3:273235/1‑149 (MQ=255)
        gATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACg                                                                                                                                             >  5:69359/1‑148 (MQ=255)
         aTGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACg                                                                                                                                             >  5:312137/1‑147 (MQ=255)
         aTGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCACCCTGGGCGGTGGGGATCAGGCTGACGt                                                                                                                                            <  8:342292/148‑1 (MQ=255)
             gcTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCtt                                                                                                                                       >  6:100090/1‑149 (MQ=255)
                 ccAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCt                                                                                                                                   >  6:233614/1‑149 (MQ=255)
                 ccAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCt                                                                                                                                   >  3:38452/1‑149 (MQ=255)
                    atcGTCTTCCGGCGCCAGCTTAACCCCGCGGGGCAGCAAGGTGCGGAACTCGCAAAACTCACGCATGGCCTCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGaa                                                                                                                                <  2:171983/147‑1 (MQ=255)
                    aaCGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGaa                                                                                                                                <  5:212227/149‑1 (MQ=255)
                     aCGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGc                                                                                                                                         <  4:278942/139‑1 (MQ=255)
                     aCGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGc                                                                                                                                         >  3:278942/1‑139 (MQ=255)
                           tCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTc                                                                                                                         >  3:367773/1‑149 (MQ=255)
                            tcGGCGCCAGCTTTACCCCGCGTGGCAGGATGTTGCGTAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTg                                                                                                                           <  8:264221/145‑1 (MQ=255)
                             cGGCGCCAGCTTTACCCCGCGTGGCAGCATGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTcgc                                                                                                                       <  4:302983/149‑1 (MQ=255)
                             cGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTcgc                                                                                                                       <  4:273235/149‑1 (MQ=255)
                              ggCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTcgcc                                                                                                                      <  4:367773/149‑1 (MQ=255)
                                 gcCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCgccgcc                                                                                                                   >  6:237299/1‑149 (MQ=255)
                                  ggtggaatggcactatgaggatggtctgcgctcctacctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCt                                                                                                                  <  2:86114‑M1/35‑1 (MQ=255)
                                  ccAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCt                                                                                                                  >  8:218852/1‑149 (MQ=255)
                                     ggaatggcactatgaggatggtctgcgctcctacctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCg                                                                                                               <  3:19225‑M1/38‑1 (MQ=255)
                                         tACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCggg                                                                                                             >  7:85079/1‑147 (MQ=255)
                                           ccccGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGc                                                                                                         <  7:79279/149‑1 (MQ=255)
                                           ccccGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGc                                                                                                         <  6:312137/149‑1 (MQ=255)
                                           ccccGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGc                                                                                                         <  7:218852/149‑1 (MQ=255)
                                             ccGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCg                                                                                                               <  8:76681/141‑1 (MQ=255)
                                             ccGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCg                                                                                                               >  7:76681/1‑141 (MQ=255)
                                              cgcgTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCca                                                                                                       >  2:2769/1‑148 (MQ=255)
                                                 tgaggatggtctgcgctcctacctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCcaca                                                                                                     >  1:86114‑M1/100‑147 (MQ=255)
                                                    gcagcaAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCaaa                                                                                                <  5:94640/149‑1 (MQ=255)
                                                    gcagcaAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCaa                                                                                                 <  2:361229/148‑1 (MQ=255)
                                                      agcaAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGc                                                                                              >  4:151286/1‑149 (MQ=255)
                                                      agcaAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGc                                                                                              <  5:100090/149‑1 (MQ=255)
                                                       gcaAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGcc                                                                                             <  4:366067/149‑1 (MQ=255)
                                                        caAGTTGCGGAACTCGCAAAACTCACGCATGGCAACCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGcc                                                                                             >  1:51566/1‑148 (MQ=255)
                                                         aaGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCa                                                                                           <  4:38452/149‑1 (MQ=255)
                                                           gTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCACCGCCTTCGGGCAGCCACAGCAAAGCCCAGt                                                                                         >  4:90839/1‑149 (MQ=255)
                                                           gTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCACCGCCTTCGGGCAGCCACAGCAAAGCCCAGt                                                                                         <  3:90839/149‑1 (MQ=255)
                                                            ttGCGGAACTCGCAAAACTCACGCATAGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTc                                                                                        <  3:96246/149‑1 (MQ=255)
                                                                ggAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTCTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAAcc                                                                                   >  2:227093/1‑149 (MQ=255)
                                                                     tCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTc                                                                              >  3:238527/1‑149 (MQ=255)
                                                                       gCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCt                                                                                                                                   <  5:130782/95‑1 (MQ=255)
                                                                       gCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCt                                                                                                                                   >  6:130782/1‑95 (MQ=255)
                                                                       gCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTcc                                                                             <  4:171589/148‑1 (MQ=255)
                                                                       ctggtcgactcggtcaacgaattccagcgcctgcccgacgagccgttctgtggcagcctggcgggtaacaaggaagcGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCt                                                                            >  4:19225‑M1/78‑149 (MQ=255)
                                                                         aaaaCTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCgg                                                                                                              <  1:362296/114‑1 (MQ=255)
                                                                         aaaaCTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCgg                                                                                                              >  2:362296/1‑114 (MQ=255)
                                                                              tCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTcgccg                                                                                                                     <  7:300818/102‑1 (MQ=255)
                                                                              tCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTcgccg                                                                                                                     >  8:300818/1‑102 (MQ=255)
                                                                              tCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTAcc                                                                     >  4:234555/1‑149 (MQ=255)
                                                                                   cATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCa                                                                <  2:51566/149‑1 (MQ=255)
                                                                                    aTGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAg                                                               >  1:222018/1‑149 (MQ=255)
                                                                                     tGGCATGCAGCAGGGCCTGGCGCAGGCCGTTGTGGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTTGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGc                                                                                                   <  2:226895/113‑1 (MQ=255)
                                                                                     tGGCATCCAGCAGGCCCTGGCGCAGGCCGTAGACGTGGGTGCCGCCCTGGGCGGTGGGGATCACGTTGACGTACCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGc                                                                                                   >  1:226895/1‑113 (MQ=255)
                                                                                        cATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTg                                                           <  5:42978/149‑1 (MQ=255)
                                                                                        cATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGCTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTg                                                           >  8:79986/1‑149 (MQ=255)
                                                                                         aTCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCtt                                                                           >  3:109577/1‑132 (MQ=255)
                                                                                         aTCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCtt                                                                           <  4:109577/132‑1 (MQ=255)
                                                                                         aTCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGc                                                          >  3:370911/1‑149 (MQ=255)
                                                                                           ccAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGc                                                                  <  4:296197/139‑1 (MQ=255)
                                                                                           ccAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGc                                                                  >  3:296197/1‑139 (MQ=255)
                                                                                             agcagGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCcaca                                                      <  3:234555/149‑1 (MQ=255)
                                                                                             agcagGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCcaca                                                      <  4:314631/149‑1 (MQ=255)
                                                                                                   cccTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTCTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACgg                                                <  1:227093/149‑1 (MQ=255)
                                                                                                    ccTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGc                                               >  6:1517/1‑149 (MQ=255)
                                                                                                        gcgcAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCtcg                                            <  4:238527/148‑1 (MQ=255)
                                                                                                          gcAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCtcgtcg                                         >  5:80211/1‑149 (MQ=255)
                                                                                                            aGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCggg                                       <  2:222018/149‑1 (MQ=255)
                                                                                                            aGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCggg                                       <  7:79986/149‑1 (MQ=255)
                                                                                                                cGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAgg                                   >  5:367074/1‑149 (MQ=255)
                                                                                                                    gACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGcc                                                         >  6:108194/1‑123 (MQ=255)
                                                                                                                    gACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGcc                                                         <  5:108194/123‑1 (MQ=255)
                                                                                                                     aCGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAGTCCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGgcgc                                <  1:289753/148‑1 (MQ=255)
                                                                                                                     aCGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTg                              <  1:151194/149‑1 (MQ=255)
                                                                                                                       gTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAgg                                   <  6:359969/142‑1 (MQ=255)
                                                                                                                       gTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAgg                                   >  5:359969/1‑142 (MQ=255)
                                                                                                                          ggTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAAt                          <  5:237299/148‑1 (MQ=255)
                                                                                                                           gTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTc                        <  5:1517/149‑1 (MQ=255)
                                                                                                                              ccgccCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGtt                     <  6:80211/149‑1 (MQ=255)
                                                                                                                              ccgccCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGtt                     <  7:295176/149‑1 (MQ=255)
                                                                                                                               cgccCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCtt                                                                           <  5:265091/94‑1 (MQ=255)
                                                                                                                               cgccCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCtt                                                                           >  6:265091/1‑94 (MQ=255)
                                                                                                                                 cccTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTgg                             <  6:333632/138‑1 (MQ=255)
                                                                                                                                 cccTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTgg                             >  5:333632/1‑138 (MQ=255)
                                                                                                                                 cccTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGAc                  <  5:233614/149‑1 (MQ=255)
                                                                                                                                            ggggATCAGGGTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGTCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGACCGAGTCGACCa       <  6:69359/149‑1 (MQ=255)
                                                                                                                                                aTCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGACCGAGTCGACCAgg     >  7:249634/1‑147 (MQ=255)
                                                                                                                                                 tCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGACCGAGTCGACCAGGTAg  >  7:341839/1‑149 (MQ=255)
                                                                                                                                                    GGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCggg                                       <  6:240193‑M1/109‑1 (MQ=255)
                                                                                                                                                    GGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCggg                                       >  5:240193‑M1/1‑109 (MQ=255)
                                                                                                                                                    |                                                                                                                                                  
ACGAAGGTGATGCGCTCCCAAACGTCTTCCGGCGCCAGCTTTACCCCGCGTGGCAGCAAGTTGCGGAACTCGCAAAACTCACGCATGGCATCCAGCAGGCCCTGGCGCAGGCCGTTGACGTGGGTGCCGCCCTGGGCGGTGGGGATCAGGTTGACGTAGCTTTCCTGAATGCTGTCGCCGCCTTCGGGCAGCCACAGCAAAGCCCAGTCAACCGCTTCCTTGTTACCCGCCAGGCTGCCACAGAACGGCTCGTCGGGCAGGCGCTGGAATTCGTTGACCGAGTCGACCAGGTAG  >  NC_002947/5588180‑5588473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.