New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 380130	51 (0.860)	4 (0.070)	4/242	NT	7.2%	coding (427/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 380163	55 (0.980)					coding (460/1107 nt)	gbcB	glycine‑betaine dioxygenase subunit

GGCGCCGAGCTGCCGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGTTA  >  NC_002947/380019‑380308                                                                                                                                                 |                                                                                                                                                   ggCGCCGAGCTGCCGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGtcga                                                                                                                                                >  7:116357‑M2/1‑145 (MQ=255)   cgcCGAGCTGCCGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGTGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATTCCAACGtcgaca                                                                                                                                              <  6:119276‑M2/149‑7 (MQ=255)            gCCGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCg                                                                                                                                    >  7:98421/1‑149 (MQ=255)             ccGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTc                                                                                                                                     <  6:195103/147‑1 (MQ=255)                   cACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTGTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAg                                                                                                                             >  5:331288/1‑149 (MQ=255)                   cACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCcaca                                                                                                                              <  7:333177/148‑1 (MQ=255)                      ggCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTTATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAgcgc                                                                                                                          <  2:227269/149‑1 (MQ=255)                        cccGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTc                                                                                                                                  <  5:266830/139‑1 (MQ=255)                        cccGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTc                                                                                                                                  >  6:266830/1‑139 (MQ=255)                            gTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTc                                                                                                                    <  4:353886/149‑1 (MQ=255)                            gTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTc                                                                                                                    <  6:167016/149‑1 (MQ=255)                                     ttCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGaaa                                                                                                             <  4:261988/147‑1 (MQ=255)                                       cAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGAca                                                                                                         >  2:7518/1‑149 (MQ=255)                                       cAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGAc                                                                                                          <  6:331288/148‑1 (MQ=255)                                             cATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGa                                                                                                           >  6:49780/1‑141 (MQ=255)                                             cATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGa                                                                                                           <  5:49780/141‑1 (MQ=255)                                                cGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTac                                                                                                 >  5:276493/1‑148 (MQ=255)                                                  aCTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTaccac                                                                                              >  1:225813/1‑149 (MQ=255)                                                  aCTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTaccac                                                                                              >  5:266295/1‑149 (MQ=255)                                                         tgctgGCAAGGTGCTGTACCTGTCGGGCGGCGTCTGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGc                                                                                       >  6:96958/1‑149 (MQ=255)                                                                aaGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACa                                                                                <  6:266295/149‑1 (MQ=255)                                                                aaGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACa                                                                                <  2:225813/149‑1 (MQ=255)                                                                  ggTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGaa                                                                                  >  1:190036/1‑145 (MQ=255)                                                                  ggTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGa                                                                              <  5:119276/149‑1 (MQ=255)                                                                    tGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACTGCGAGCTGGAACAGATg                                                                            <  8:98421/149‑1 (MQ=255)                                                                           ccTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTcgc                                                                     >  4:46044/1‑149 (MQ=255)                                                                             tGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTcgcg                                                                    >  4:88147/1‑148 (MQ=255)                                                                               tCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCAt                                                                 <  3:88147/149‑1 (MQ=255)                                                                                        gTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCAGTTCGCCGAAAGACATCATCTACCACAGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACt                                                         >  7:158825/1‑148 (MQ=255)                                                                                           ggTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATgg                                                                           <  6:84144/127‑1 (MQ=255)                                                                                           ggTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATgg                                                                           >  5:84144/1‑127 (MQ=255)                                                                                            gTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGc                                                    >  4:112452/1‑149 (MQ=255)                                                                                               ttACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTg                                                 <  6:276493/149‑1 (MQ=255)                                                                                               ttACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTg                                                 >  3:190699/1‑149 (MQ=255)                                                                                                  ccccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGca                                               >  6:78683/1‑148 (MQ=255)                                                                                                  ccccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGca                                               <  5:96958/148‑1 (MQ=255)                                                                                                   cccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATc                                                                <  4:91323/130‑1 (MQ=255)                                                                                                   cccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATc                                                                >  3:91323/1‑130 (MQ=255)                                                                                                    ccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGtcgacatcactggggtaataccgacgccgcccgacaggtacagcaccttgccagcagggaagtcgatggcgttgaacagccccaccgggccgtgcaccggcag                                             <  6:57753‑M2/149‑104 (MQ=255)                                                                                                    ccAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCAcat                                            >  5:342380/1‑149 (MQ=255)                                                                                                     cAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGc                                                                                       <  2:311168/105‑1 (MQ=255)                                                                                                     cAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTc                                                       <  5:80850/137‑1 (MQ=255)                                                                                                     cAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTc                                                       >  6:80850/1‑137 (MQ=255)                                                                                                     cAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACAACATCTACCACCGCGAGc                                                                                       >  1:311168/1‑105 (MQ=255)                                                                                                      aGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGtcgacatcactggggtaataccgacgccgcccgacaggtacagcaccttgccagcagggaagtcgatggcgttgaacagccccaccgggccgtgcaccggcagct                                           <  5:269992‑M2/149‑106 (MQ=255)                                                                                                      aGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCAcatca                                          <  5:78683/149‑1 (MQ=255)                                                                                                           tGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGtcgacatcactggggtaataccgacgccgcccgacaggtacagcaccttgccagcagggaagtcgatggcgttgaacagccccaccgggccgtgcaccggcagctcggcg                                      >  6:269992‑M2/1‑39 (MQ=255)                                                                                                           tGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGc                                     <  3:46044/149‑1 (MQ=255)                                                                                                               gATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCgag                                  >  6:161338/1‑148 (MQ=255)                                                                                                                     gcgcTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCgag                                  <  1:322176/142‑1 (MQ=255)                                                                                                                     gcgcTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCgag                                  >  2:322176/1‑142 (MQ=255)                                                                                                                                aCGACACCAATGCCAACGTCGACATGGGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGt                   >  1:197356/1‑147 (MQ=255)                                                                                                                                 cGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTg                  <  5:161338/146‑1 (MQ=255)                                                                                                                                     acCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTg           >  7:283073/1‑149 (MQ=255)                                                                                                                                     acCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTg           >  7:308890/1‑149 (MQ=255)                                                                                                                                       cAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCTTCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTggg         >  8:37165/1‑149 (MQ=255)                                                                                                                                         ctGCCAACGTCGACAT‑GGTCTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCga                                   <  6:3148/120‑1 (MQ=255)                                                                                                                                          tGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCgg      <  3:112452/149‑1 (MQ=255)                                                                                                                                           gCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGAggg     >  3:260562/1‑149 (MQ=255)                                                                                                                                            ccAACGtcgacatcactggggtaataccgacgccgcccgacaggtacagcaccttgccagcagggaagtcgatggcgttgaacagccccaccgggccgtgcaccggcagctcggcgccttcgtgcatggtgtcatgcaggaagttcga      >  5:57753‑M2/1‑6 (MQ=255)                                                                                                                                            ccAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGt    <  1:7518/149‑1 (MQ=255)                                                                                                                                             cAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGt    >  1:161957/1‑148 (MQ=255)                                                                                                                                              aaCGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGTTa  >  3:178133/1‑149 (MQ=255)                                                                                                                                              aaCGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGTTa  >  4:10391/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GGCGCCGAGCTGCCGGTGCACGGCCCGGTGGGGCTGTTCAACGCCATCGACTTCCCTGCTGGCAAGGTGCTGTACCTGTCGGGCGGCGTCGGTATTACCCCAGTGATGTCGATGGCGCGCTGGTTCTACGACACCAATGCCAACGTCGACAT‑GGTGTTCGTCCACAGCGCCCGTTCGCCGAAAGACATCATCTACCACCGCGAGCTGGAACAGATGGCGTCGCGCATCCCCAACTTCAGCCTGCACATCATTTGCGAGAAGCACGGGCTGGGTGAGCCGTGGGCGGGTTA  >  NC_002947/380019‑380308

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.