New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2447276	38 (0.640)	3 (0.050)	3/244	NT	6.8%	coding (665/1011 nt)	nagZ	beta‑N‑acetylglucosaminidase
	?	NC_002947	= 2447298	46 (0.820)					coding (687/1011 nt)	nagZ	beta‑N‑acetylglucosaminidase

ATCCCCACTGATGAACGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGCCGGTTGTG  >  NC_002947/2447152‑2447431                                                                                                                                                   |                                                                                                                                      aTCCCCACTGATGAACGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTtg                                                                                                                                     <  4:318962‑M2/149‑3 (MQ=255)      cACTGATGAACGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTtggttg                                                                                                                                 <  2:261406‑M2/148‑7 (MQ=255)        cTGATGAACGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAg                                                                                                                              <  1:178806/149‑1 (MQ=255)              aaCGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATc                                                                                                                        <  3:318962/149‑1 (MQ=255)               aCGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATcc                                                                                                                       <  1:261406/149‑1 (MQ=255)                     ccTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGAGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTg                                                                                                                 <  1:363295/149‑1 (MQ=255)                       tGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGAGGCAGTGATGCCGGCGCTTGTCATCTACCCGCATGTTGACAAACAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGc                                                                                                               >  1:343674/1‑149 (MQ=255)                                     cAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAAGACATCCTGCGTGGCGAGCTGGGCTTTGa                                                                                                 >  2:362367/1‑149 (MQ=255)                                        tCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATgg                                                                                              <  7:190502/149‑1 (MQ=255)                                          cGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATgggg                                                                                            <  8:67798/149‑1 (MQ=255)                                          cGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATgggg                                                                                            <  6:314190/149‑1 (MQ=255)                                            aCCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGt                                                                                           >  5:367104/1‑148 (MQ=255)                                                 gTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGAtttt                                                                                     >  1:192587/1‑149 (MQ=255)                                                    ccGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAg                                                                                  <  2:242259/149‑1 (MQ=255)                                                         tACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGtgat                                                                              <  1:239710/148‑1 (MQ=255)                                                               ccTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGGGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGt                                                                       <  6:389987/149‑1 (MQ=255)                                                                     tGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATgg                                                                 >  5:235438/1‑149 (MQ=255)                                                                     tGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGAAGGGGTGATTTTCAGTGATGACCTGTCGATg                                                                  <  1:29905/148‑1 (MQ=255)                                                                               gcggcAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGGGATTGTCAGTGATGACCTGTCGATGGCCGGTGCGCa                                                       >  8:291922/1‑149 (MQ=255)                                                                                cggcAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCAt                                                      <  6:367104/149‑1 (MQ=255)                                                                                cggcAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCAt                                                      <  1:148177/149‑1 (MQ=255)                                                                                            cGGCGCATGTCTTCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGAc                                          >  8:82524/1‑149 (MQ=255)                                                                                            cGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGAc                                          <  4:366719/149‑1 (MQ=255)                                                                                            cGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGAc                                          >  3:31093/1‑149 (MQ=255)                                                                                                      cATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGAtt                                                                                       >  8:148526/1‑94 (MQ=255)                                                                                                      cATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGAtt                                                                                       <  7:148526/94‑1 (MQ=255)                                                                                                        tCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCg                               >  5:209679/1‑148 (MQ=255)                                                                                                             ccGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATc                           >  3:139678/1‑147 (MQ=255)                                                                                                              cGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAg                        >  5:80476/1‑149 (MQ=255)                                                                                                              cGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAg                        <  6:209679/149‑1 (MQ=255)                                                                                                                cAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAggc                      <  2:192587/149‑1 (MQ=255)                                                                                                                  ggTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTtggttgtcaacctgcgggtagatgacatgcgccggcatcactgccgccagttgcccactcaggcgggtaaacggcaccaggtcggactggcgcagttgttccaggctgcgttcat                    <  3:376573‑M2/149‑116 (MQ=255)                                                                                                                      gACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCt                >  7:228469/1‑149 (MQ=255)                                                                                                                       aCAACCAGCCCGCTGGCTTCTCGCGGCGTtggttgtcaacctgcgggtagatgacatgcgccggcatcactgccgccagttgcccactcaggcgggtaaacggcaccaggtcggactgg                                             <  5:196504‑M2/119‑91 (MQ=255)                                                                                                                       aCAACCAGCCCGCTGGCTTCTCGCGGCGTtggttgtcaacctgcgggtagatgacatgcgccggcatcactgccgccagttgcccactcaggcgggtaaacggcaccaggtcggactgg                                             >  6:196504‑M2/1‑29 (MQ=255)                                                                                                                        cAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGa              <  1:365956/149‑1 (MQ=255)                                                                                                                          aCCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAgc            >  2:258183/1‑149 (MQ=255)                                                                                                                           ccAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAgcg           >  8:85779/1‑149 (MQ=255)                                                                                                                           ccAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAgcg           >  4:171463/1‑149 (MQ=255)                                                                                                                           ccAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTAGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAg                                  >  7:186921/1‑126 (MQ=255)                                                                                                                           ccAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTAGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAg                                  <  8:186921/126‑1 (MQ=255)                                                                                                                            cAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAgcgc          <  6:235438/149‑1 (MQ=255)                                                                                                                            cAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAgcgc          >  4:81720/1‑149 (MQ=255)                                                                                                                             aGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGcc         <  1:258183/149‑1 (MQ=255)                                                                                                                              gCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGCCg        <  7:82524/149‑1 (MQ=255)                                                                                                                               cccGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAggc                      >  7:213901/1‑134 (MQ=255)                                                                                                                               cccGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAggc                      <  8:213901/134‑1 (MQ=255)                                                                                                                                 cGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGcc                                >  4:375044/1‑122 (MQ=255)                                                                                                                                 cGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGcc                                <  3:375044/122‑1 (MQ=255)                                                                                                                                   cTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTCAGCGCCgcctcg   <  4:31093/149‑6 (MQ=255)                                                                                                                                      gCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGCCGGTtgtg  <  3:81720/147‑1 (MQ=255)                                                                                                                                      gCTTCTCGCGGCGTTGGTTGCAAGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGCCGGTtgtg  <  1:362367/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                      ATCCCCACTGATGAACGCAGCCTGGAACAACTGCGCCAGTCCGACCTGGTGCCGTTTACCCGCCTGAGTGGGCAACTGGCGGCAGTGATGCCGGCGCATGTCATCTACCCGCAGGTTGACAACCAGCCCGCTGGCTTCTCGCGGCGTTGGTTGCAGGACATCCTGCGTGGCGAGCTGGGCTTTGATGGGGTGATTTTCAGTGATGACCTGTCGATGGCCGGTGCGCATGTGGTGGGCGACGCGGCCAGCCGTATCGAGGCGGCGCTGAGCGCCGGTTGTG  >  NC_002947/2447152‑2447431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.