New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4541305	49 (0.830)	4 (0.070)	4/246	NT	7.8%	coding (22/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB
	?	NC_002947	= 4541332	47 (0.830)					coding (49/1503 nt)	nhaB	Na(+)/H(+) antiporter NhaB

CCAATGGCCGTACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGAAATGCTACCC  >  NC_002947/4541184‑4541474                                                                                                                                                       |                                                                                                                                               ccAATGGCCGTACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGt                                                                                                                                                >  7:191998/1‑149 (MQ=255)    aTGGCCGTACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgc                                                                                                                                             <  1:100126‑M2/149‑4 (MQ=255)       gCCGTACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgccg                                                                                                                                           >  8:112591‑M2/1‑143 (MQ=255)           tACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTg                                                                                                                                      <  6:1603/149‑1 (MQ=255)                gtgCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTAc                                                                                                                                  >  7:207487/1‑148 (MQ=255)                            ggACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCt                                                                                                                     <  2:100126/149‑1 (MQ=255)                             gACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACGAGTGTTTGTGCGCAAGTCGCCGATTTTGAACAAGGTGGTCATc                                                                                                                      >  1:126154/1‑149 (MQ=255)                                       cTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTg                                                                                                          <  2:43625/149‑1 (MQ=255)                                          gCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGt                                                                                                        <  4:149458/148‑1 (MQ=255)                                           ccTAAGACGCGTATATCCGGCACCGTGCTCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TATCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGc                                                                                                      <  8:183824/149‑1 (MQ=255)                                           ccTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGc                                                                                                      <  5:64889/149‑1 (MQ=255)                                             tAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGACCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCt                                                                                                     >  6:298829/1‑148 (MQ=255)                                                gACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAAc                                                                                                 <  1:16600/149‑1 (MQ=255)                                                 aCGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCAGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTCCTCAAcc                                                                                                >  5:168150/1‑149 (MQ=255)                                                        tatCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCtgtt                                                                                         >  4:111816/1‑149 (MQ=255)                                                          tCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCtgttgt                                                                                       >  7:256737/1‑149 (MQ=255)                                                            cGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGttgttg                                                                                     <  8:207487/149‑1 (MQ=255)                                                                       gcCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTgg                                                                          >  1:90362/1‑149 (MQ=255)                                                                       gcCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTgg                                                                          >  4:335389/1‑149 (MQ=255)                                                                        ccATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAggtgg                                                                                                                           >  8:123428/1‑99 (MQ=255)                                                                        ccATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAggtgg                                                                                                                           <  7:123428/99‑1 (MQ=255)                                                                                 aaTTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTCGc                                                                 <  2:90362/148‑1 (MQ=255)                                                                                  aTTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCg                                                                <  3:111816/148‑1 (MQ=255)                                                                                    tataAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGAcc                                                             >  3:53855/1‑149 (MQ=255)                                                                                     ataAGGATACATATTTATGTCACGCCCACTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCg                                                            >  1:210645/1‑149 (MQ=255)                                                                                         ggATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTg                                                        >  4:134657/1‑149 (MQ=255)                                                                                           aTACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTggg                                                      <  2:126154/149‑1 (MQ=255)                                                                                           aTACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTggg                                                      <  3:335389/149‑1 (MQ=255)                                                                                             aCATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCa                                                    >  6:107492/1‑149 (MQ=255)                                                                                             aCATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCa                                                    >  1:255433/1‑149 (MQ=255)                                                                                              cATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCAc                                                   <  5:298829/149‑1 (MQ=255)                                                                                               atatTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCtg                                                                                           >  3:290135/1‑108 (MQ=255)                                                                                               atatTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCtg                                                                                           <  4:290135/108‑1 (MQ=255)                                                                                               atatTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACt                                                  >  4:43145/1‑149 (MQ=255)                                                                                               atatTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACt                                                  <  2:210645/149‑1 (MQ=255)                                                                                                 atTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTgg                                                >  7:251187/1‑149 (MQ=255)                                                                                                     aTGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGTTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGc                                             <  6:168150/148‑1 (MQ=255)                                                                                                        tCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCtag                                          >  8:216723/1‑146 (MQ=255)                                                                                                        tCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCg                                          <  1:163164/148‑1 (MQ=255)                                                                                                          aCGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCa                                                                              <  2:59089/110‑1 (MQ=255)                                                                                                          aCGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCa                                                                              >  1:59089/1‑110 (MQ=255)                                                                                                               cccTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATc                                  <  8:256737/149‑1 (MQ=255)                                                                                                                  tGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgccggtcagggggcgtgacataaatatgtatccttataattcagcgatggcgcacggtgccggatatacgcgtcttaggcaaggcgcacagtcccgtttttggcacatgtac                               <  6:96611‑M2/149‑114 (MQ=255)                                                                                                                    aCCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCAc                             <  8:191998/149‑1 (MQ=255)                                                                                                                     ccGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgccggtcagggggcgtgacataaatatgtatccttataattcagcgatggcgcacggtgccggatatacgcgtcttaggcaaggcgcacagtcccgtttttggcacatgtac                               <  6:144650‑M2/146‑114 (MQ=255)                                                                                                                     ccGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgccggtcagggggcgtgacataaatatgtatccttataattcagcgatggcgcacggtgccggatatacgcgtcttaggcaaggcgcacagtcccgtttttggcacatgtac                               >  5:144650‑M2/1‑33 (MQ=255)                                                                                                                          gcCCTCGCCCACG‑GT‑TTTCTGGGCAAGTcgccggtcagggggcgtgacataaatatgtatccttataattcagcgatggcgcacggtgccggatatacgcgtcttaggcaaggcgcacagtcccgtttttggcacatgtacggccattg                       >  5:96611‑M2/1‑28 (MQ=255)                                                                                                                            ccTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCa                     >  5:14545/1‑149 (MQ=255)                                                                                                                              tCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATg                   >  8:103711/1‑149 (MQ=255)                                                                                                                                   cACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAAc                                                                                <  2:43622/83‑1 (MQ=255)                                                                                                                                   cACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAAc                                                                                >  1:43622/1‑83 (MQ=255)                                                                                                                                        gT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGaaa          <  5:86381/149‑1 (MQ=255)                                                                                                                                            ttCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGAAATg        <  2:255433/148‑1 (MQ=255)                                                                                                                                                 ggCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGAAATGCTa     <  5:107492/146‑1 (MQ=255)                                                                                                                                                 ggCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGAAATGCTAccc  <  7:216723/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                               CCAATGGCCGTACATGTGCCAAAAACGGGACTGTGCGCCTTGCCTAAGACGCGTATATCCGGCACCGTGCGCCATCGCTGAATTATAAGGATACATATTTATGTCACGCCCCCTGACCGGCGCCCTCGCCCACG‑GT‑TTTCTGGGCAAGTCGCCGATTTGGTACAAGGTGGTCATCTGCCTGTTTTTGGTGCTCAACCCGCTGTTGTTGGTAACCATTGGCCCGGTTGCGACCGGCTGGGCACTGGTGCTCGAATTCATCTTCACCCTGGCCATGGCCCTGAAATGCTACCC  >  NC_002947/4541184‑4541474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.