New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5500882 =	43 (0.730)	4 (0.070)	4/246	NT	9.0%	coding (348/855 nt)	PP_4834	SPFH domain‑containing protein
	?	NC_002947	5500940 =	40 (0.700)					coding (406/855 nt)	PP_4834	SPFH domain‑containing protein

CGCCCTGTGTTTCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCA  >  NC_002947/5500792‑5501087                                                                                                                                                     |                                                                                                                                                    tttgatgtcttgaatctccaccgagcgcacggtcacgccccagtcttcggtctgctcggacattgcatcgcgcaggcgggccttgatctgCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGc                                                                                                                                                     >  3:166071‑M1/91‑149 (MQ=255)  gCCCTGTGTTTCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCa                                                                                                                                                    <  6:177411/149‑1 (MQ=255)   cccTGTGTTTCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAg                                                                                                                                                   <  1:257648/149‑1 (MQ=255)     cTGTGTTTCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGAt                                                                                                                                                 <  8:142528/149‑1 (MQ=255)          tttCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAgg                                                                                                                                            <  1:315433/149‑1 (MQ=255)              gCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCg                                                                                                                                        >  3:288135/1‑149 (MQ=255)                    gTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTgcg                                                                                                                                  <  2:307443/149‑1 (MQ=255)                          gACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATg                                                                                                                             <  3:339214/148‑1 (MQ=255)                                    aaGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGa                                                                                                                   <  4:288135/148‑1 (MQ=255)                                    aaGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAg                                                                                                                  <  2:156931/149‑1 (MQ=255)                                        cTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGa                                                                                                              >  1:227213/1‑149 (MQ=255)                                              tGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTcc                                                                                                                     <  7:120783/136‑1 (MQ=255)                                              tGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTcc                                                                                                                     >  8:120783/1‑136 (MQ=255)                                                    gCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTggg                                                                                                  >  7:149776/1‑149 (MQ=255)                                                        gACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGt                                                                                              >  5:97861/1‑149 (MQ=255)                                                         aCTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTg                                                                                             <  2:227213/149‑1 (MQ=255)                                                          cTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGa                                                                                            <  5:185459/149‑1 (MQ=255)                                                           ttCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGAc                                                                                           >  5:52830/1‑149 (MQ=255)                                                            tctcGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGAcc                                                                                          >  3:13477/1‑149 (MQ=255)                                                            tctcGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGAcc                                                                                          >  8:205785/1‑149 (MQ=255)                                                                gTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCACCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTgc                                                                                      >  2:215559/1‑149 (MQ=255)                                                                     ccGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCg                                                                                 >  6:79841/1‑149 (MQ=255)                                                                     ccGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCg                                                                                 <  4:50984/149‑1 (MQ=255)                                                                        tCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTg                                                                              <  5:79841/149‑1 (MQ=255)                                                                          aCCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTg                                                                              >  4:287054/1‑147 (MQ=255)                                                                           ccAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTg                                                                              >  8:40288/1‑146 (MQ=255)                                                                                   aCCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGa                                                                   >  5:105913/1‑149 (MQ=255)                                                                                        gACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGt                                                                               <  5:331885/132‑1 (MQ=255)                                                                                        gACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGt                                                                               >  6:331885/1‑132 (MQ=255)                                                                                          gctcgcggctggacagcgcctcgtcgaggtccattgcaccgacgatggcgcgcagcgagCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCaaa                                                            >  3:166071‑M2/60‑149 (MQ=255)                                                                                          ccTCGCTGCGCACCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCaaa                                                            <  1:215559/149‑1 (MQ=255)                                                                                           CTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAAc                                                           >  8:149776‑M1/1‑149 (MQ=255)                                                                                           CTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAAc                                                           <  6:122023‑M1/149‑1 (MQ=255)                                                                                            tcgcggctggacagcgcctcgtcgaggtccattgcaccgacgatggcgcgcagcgagCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAAcc                                                          >  4:19129‑M2/58‑149 (MQ=255)                                                                                               CTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTc                                                       >  3:153362‑M1/1‑149 (MQ=255)                                                                                                tGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCCATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCg                                                      >  3:362903/1‑149 (MQ=255)                                                                                                ggctggacagcgcctcgtcgaggtccattgcaccgacgatggcgcgcagcgagCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCg                                                      <  4:166071‑M2/96‑1 (MQ=255)                                                                                                  cgcgcCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCgg                                                     <  5:122023/148‑1 (MQ=255)                                                                                                     gcCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGaaaa                                                 <  6:105913/149‑1 (MQ=255)                                                                                                     gcCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGaaaa                                                 <  6:97861/149‑1 (MQ=255)                                                                                                      ccATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGaaaa                                                 >  8:213815/1‑148 (MQ=255)                                                                                                       cATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACa                                               >  2:200952/1‑149 (MQ=255)                                                                                                        agcgcctcgtcgaggtccattgcaccgacgatggcgcgcagcgagCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACAt                                              <  3:19129‑M2/104‑1 (MQ=255)                                                                                                        aTCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACAt                                              <  7:40288/149‑1 (MQ=255)                                                                                                         tcgtcgGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATg                                             <  3:287054/149‑1 (MQ=255)                                                                                                                   aaTGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGcc                                    >  5:279381/1‑148 (MQ=255)                                                                                                                   aaTGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGcc                                    <  6:279381/148‑1 (MQ=255)                                                                                                                   aaTGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCa                                   >  7:317913/1‑149 (MQ=255)                                                                                                                             gacgaGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGc                                                                                                                 >  2:229468/1‑61 (MQ=255)                                                                                                                             gacgaGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGc                                                                                                                 <  1:229468/61‑1 (MQ=255)                                                                                                                                     gcTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCgg                 <  8:317913/149‑1 (MQ=255)                                                                                                                                             gCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGt         <  7:205785/149‑1 (MQ=255)                                                                                                                                             gCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGt         >  7:110867/1‑149 (MQ=255)                                                                                                                                               cgcgAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGAcc                                                                                          <  5:90371/66‑1 (MQ=255)                                                                                                                                               cgcgAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGAcc                                                                                          >  6:90371/1‑66 (MQ=255)                                                                                                                                               cgcgAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGa       <  7:213815/149‑1 (MQ=255)                                                                                                                                                gcgagCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAg      >  1:370426‑M2/6‑149 (MQ=255)                                                                                                                                                    gCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGCACGTGAGCGCa  >  7:291865‑M2/2‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CGCCCTGTGTTTCGCCAAGGTAGTCGACCCGCAGAAAGCCTCGTATGGTGTGCAGGACTTCTCGTTCGCCGTCACCAGCCTGACCATGACCTCGCTGCGCGCCATCGTCGGTGCAATGGACCTCGACGAGGCGCTGTCCAGCCGCGAGCAGATCAAGGCCCGCCTGCGCGATGCAATGTCCGAGCAGACCGAAGACTGGGGCGTGACCGTGCGCTCGGTGGAGATTCAAGACATCAAACCCTCGGAAAACATGCAACTGGCCATGGAACGCCAGGCCGCGGCCGAACGTGAGCGCA  >  NC_002947/5500792‑5501087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.