New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2230049	4 (0.070)	51 (0.840)	42/284	0.6	92.7%	coding (13/636 nt)	PP_1968	TetR family transcriptional regulator
	?	NC_002947	4536203 =	NA (NA)					intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase

ACGCCAACGTTTCGTTCCTCCCGCAGCGCATGGCCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2229906‑2230049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCG  >  NC_002947/4536203‑4536349                                                                                                                                                                                                                                                                                                     tCGCCAACGTTTCGTTCCTCCCGCAGCGCATGGCCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAG                                                                                                                                                <  5:358210/148‑1   GCCAACGTTTCGTTCCTCCCGCAGCGCATGGCCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGG                                                                                                                                               >  7:259791/1‑148   GCCAACGTTTCGTTCCTCCCGCAGCGCATGGCCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAG                                                                                                                                                >  6:358210/1‑147                   TCCCGCAGCGCATGGCCATATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATC                                                                                                                                       >  8:198204/1‑140                   TCCCGCAGCGCATGGCCATATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATC                                                                                                                                       <  7:198204/140‑1                                  CCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACC                                                                                                               >  1:71047/1‑149                                   CGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCT                                                                                                              >  8:144293/1‑149                                        GCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTC                                                                                                         >  8:25402/1‑149                                        GCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGG                                                                                                                                              <  1:308141/112‑1                                        GCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGG                                                                                                                                              >  2:308141/1‑112                                         CATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCC                                                                                                        >  1:170236/1‑149                                           TCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCC                                                                                                       >  1:158917/1‑148                                                    ACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATT                                                                                                                            <  1:33861/118‑1                                                    ACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATT                                                                                                                            >  2:33861/1‑118                                                    ACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATT                                                                                                                            >  6:92973/1‑118                                                    ACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATT                                                                                                                            <  5:92973/118‑1                                                         CATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCC                                                                                         <  8:259791/148‑1                                                              GTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTC                                                                                   >  1:274365/1‑149                                                                 GATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTT                                                                                 <  1:143732/148‑1                                                                     ATCCGTGCAATTTCCCGCAAGTTAGGCATAATATACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGAAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTG                                                                             <  3:233580/148‑1                                                                      TCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGA                                                                           <  2:170236/149‑1                                                                         GTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTG                                                                             <  8:99976/144‑1                                                                         GTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTG                                                                             >  7:99976/1‑144                                                                                   CCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCAT                                                              >  3:22996/1‑149                                                                                    CGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCAT                                                              >  3:118658/1‑148                                                                                     GCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGA                                                            <  4:118658/149‑1                                                                                       AAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATG                                                          >  7:62106/1‑149                                                                                            AGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGC                                                                     >  4:109519/1‑133                                                                                            AGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGC                                                                     <  3:109519/133‑1                                                                                             GGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCC                                                    <  2:34487/149‑1                                                                                                ATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGAC                                                 <  7:144293/149‑1                                                                                                   ATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAG                                               >  2:228130/1‑148                                                                                                       ACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATACATCATCCCCACATTCCAACAGTCCACCTGATTCACGATCCTGTGCTCCCTTATTCATTCTGGAGCCAGCCCGCCATGATGCGCACCGACAGCAAAG                                          >  5:11569/1‑149                                                                                                           CTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCTGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG                                       >  7:13620/1‑148                                                                                                               GATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCTGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                                  <  8:13620/149‑1                                                                                                               GATTGTCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAA                                    >  8:42782/1‑147                                                                                                                    TCATCCAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTA                             <  2:274365/149‑1                                                                                                                      ATCCAGTCCTTCCCATGCAGAAATAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTAC                            >  1:134597/1‑148                                                                                                                         CAGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGCTGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTC                         >  6:319651/1‑148                                                                                                                          AGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                                  >  3:49608/1‑138                                                                                                                          AGTCCTTCCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAA                                  <  4:49608/138‑1                                                                                                                                 CCCATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAG                >  1:208244/1‑149                                                                                                                                   CATGCAGAAAGAACGTAGGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAA                                    >  6:208688/1‑127                                                                                                                                   CATGCAGAAAGAACGTAGGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAA                                    <  5:208688/127‑1                                                                                                                                    ATGCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTACCGATGCTGTGCTGCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACACCAAGCCg             >  4:196513/1‑148                                                                                                                                      GCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTC                         <  6:344672/135‑1                                                                                                                                      GCAGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTC                         >  5:344672/1‑135                                                                                                                                        AGAAAGAACGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTG          <  8:62106/148‑1                                                                                                                                                CGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCG  >  8:232172/1‑148                                                                                                                                                CGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACC                     <  3:170305/129‑1                                                                                                                                                CGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACC                     >  4:170305/1‑129                                                                                                                                                                                                                                                                                                     ACGCCAACGTTTCGTTCCTCCCGCAGCGCATGGCCGTATGCATCGTGAAACACAGACATGCGTGGATGATCCGTGCAATTTCCCGCAAGTTAGGCATAATAAACCGCTTCGATTGTCATCCAGTCCTTCCCATGCAGAAAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2229906‑2230049 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTCG  >  NC_002947/4536203‑4536349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.