New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2230049	4 (0.070)	51 (0.840)	42/284	0.6	92.7%	coding (13/636 nt)	PP_1968	TetR family transcriptional regulator
	?	NC_002947	4536203 =	NA (NA)					intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase

GTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTC  >  NC_002947/4536064‑4536348                                                                                                                                            |                                                                                                                                                   gTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATc                                                                                                                                           >  3:267270/1‑149 (MQ=255)  ttCTGGACGGTCAGTACCCTTCTGCTGTTCCGGATGGACCTGGGACGCTGCAGCGGCGTGGCTCGCAGCATTAACTTCGTCAGCAACATCGCGGCGCTGAAGGTTTTCATCATTTTCGGGCTGGTGGACTATATCGTTTTTCGGGAtgc                                                                                                                                          <  8:244236/149‑3 (MQ=18)      ggACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCcatca                                                                                                                                      >  7:4834/1‑149 (MQ=255)       gACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCcatcat                                                                                                                                     >  3:133208/1‑149 (MQ=255)              aGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCcaca                                                                                                                              >  6:16643/1‑149 (MQ=255)                   ccTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTcc                                                                                                                          >  8:294546/1‑148 (MQ=255)                     tgctgctgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCAGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCACACCTTCCAAc                                                                                                                       >  8:54500/1‑149 (MQ=255)                        tgctgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGt                                                                                                                    >  5:87474/1‑149 (MQ=255)                         gctgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTc                                                                                                                   >  8:273429/1‑149 (MQ=255)                           tgTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAAAATCGCGGCGCAGACGGTTTTCAAAATTTCCGGACAGGTGGACTATATCGTTATAAGGGATCAATCATCCCCACATTCAAACCGTCCa                                                                                                                 >  2:321197/1‑149 (MQ=21)                             tACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCa                                                                                                                 <  4:133208/147‑1 (MQ=255)                               ccccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCAcc                                                                                                               <  3:188747/147‑1 (MQ=255)                               ccccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCAcc                                                                                                               >  4:188747/1‑147 (MQ=255)                               ccccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCt                                                                                                              >  3:164128/1‑148 (MQ=255)                               ccccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCt                                                                                                              <  4:267270/148‑1 (MQ=255)                                cccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATcccc                                                                                                                                 >  6:269090/1‑128 (MQ=255)                                cccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATcccc                                                                                                                                 <  5:269090/128‑1 (MQ=255)                                cccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGAGCCATCATCCCAACATTCCAACCGTCCAc                                                                                                                >  7:59375/1‑145 (MQ=255)                                 ccATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGAt                                                                                                           >  7:130527/1‑149 (MQ=255)                                  cATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCGGACGGTTTTCATCATTTCCTGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGAtt                                                                                                          >  2:209279/1‑149 (MQ=255)                                   aTCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTc                                                                                                         <  1:321197/149‑1 (MQ=255)                                       aCCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGa                                                                                                     <  7:294546/149‑1 (MQ=255)                                               cgcgCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGc                                                                                             >  2:62275/1‑149 (MQ=255)                                                           gTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGAtttctt                                                                                 <  6:217531/149‑1 (MQ=255)                                                              gcgcgcAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCACGATttctttct                                                                              >  2:35194/1‑149 (MQ=255)                                                                gcgcAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTgg                                                                            <  7:273429/149‑1 (MQ=255)                                                                    tgcaTGAACTTCGTCAGCAACATGGCGGCGGTGACGGTTTTCTTCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCATCCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTg                                                                             <  3:195062/143‑1 (MQ=255)                                                                    agcaTGAACTACGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGAAAGGGATCCATCATCCCCCCATGCCAACCGTCCAACTGCGTCCCGATGCGGTGCTCGCGATTTCTTGATGGagct                                                                        >  4:195062/1‑148 (MQ=25)                                                                     gcaTGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGagcca                                                                       <  8:130527/149‑1 (MQ=255)                                                                      caTGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGagccag                                                                      >  7:304445/1‑149 (MQ=255)                                                                               cGTCAGCAACATCGCGGCGCTGACGTTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATAATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCat                                                              <  7:54500/148‑1 (MQ=255)                                                                                    gCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATgcg                                                        <  7:165895/149‑1 (MQ=255)                                                                                    gCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATgcg                                                        >  8:165895/1‑149 (MQ=255)                                                                                             cggcgCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAg                                               >  6:93919/1‑149 (MQ=255)                                                                                                    gACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTccc                                                                                                       <  6:115785/86‑1 (MQ=255)                                                                                                    gACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTccc                                                                                                       >  5:115785/1‑86 (MQ=255)                                                                                                           ttCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑aaaaa                                 <  3:136461/148‑1 (MQ=255)                                                                                                             catcatTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGtc                              >  8:64458/1‑149 (MQ=255)                                                                                                                      cGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGtctacctctac                     >  6:184304/1‑149 (MQ=255)                                                                                                                       gggCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGtctacctctacc                    >  2:169115/1‑149 (MQ=255)                                                                                                                            ggTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAg               <  1:169115/149‑1 (MQ=255)                                                                                                                             gTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGc              >  1:92150/1‑149 (MQ=40)                                                                                                                                  cTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGCCCGTg         >  2:6405/1‑149 (MQ=37)                                                                                                                                     tatCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTTTGCTCCCGATTTCTTTCTGGAGCGAGCCCGCCATGATGCGCCCCGACAGCAAAGTCGAAAAAAGTCTACCTCTACCCCAAGCCCGTgg        <  1:209279/148‑1 (MQ=255)                                                                                                                                         gTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCGACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGCCCGTGGACttt   <  4:164128/148‑1 (MQ=14)                                                                                                                                         gTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGTCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTc  <  8:304445/149‑1 (MQ=14)                                                                                                                                            |                                                                                                                                                   GTTCTGGACGGTCAGTACCCTGCTGCTGTACCCCATCGACCTGGTACGCGCCAGCGGCGTGGCGCGCAGCATGAACTTCGTCAGCAACATCGCGGCGCTGACGGTTTTCATCATTTCCGGGCAGGTGGACTATATCGTTGTAAGGGATCCATCATCCCCACATTCCAACCGTCCACCTGATTCCCGATGCTGTGCTCCCGATTTCTTTCTGGAGCCAGCCCGCCATGATGCGCCCCGACAGCAAAGTCG‑AAAAAGTCTACCTCTACCCCAAGCCCGTGGACTTTC  >  NC_002947/4536064‑4536348

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.