New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 364761	74 (1.230)	4 (0.070)	4/250	NT	5.2%	coding (841/945 nt)	caiX	carnitine uptake ABC transporter substrate‑binding protein
	?	NC_002947	= 364794	75 (1.330)					coding (808/945 nt)	caiX	carnitine uptake ABC transporter substrate‑binding protein

CGAGTGTGGCGCTGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/364606‑364761 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccactgCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCC  <  NC_002947/364794‑364650                                                                                                                                                                                                                                                                                                                CGAGTGTTGCGCTGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGA                                                                                                                                                          <  6:111818/149‑1  GAGTGTGGCGCTGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAG                                                                                                                                                         >  6:197699/1‑149       TGGCGCTGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCAC                                                                                                                                                     <  6:48502/148‑1             TGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGA                                                                                                                                                          >  1:167098/1‑137             TGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGA                                                                                                                                                          <  2:167098/137‑1                                             GGCCCTGTCAGTTGGCGGTAAGCTTGAGGTGTGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAG                                                                                                               >  1:33738/1‑149                                              GCCCTGTCAGTTGGCGGTAAGCCTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTG                                                                                                             <  6:32913/149‑1                                                    TCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAA                                                                                                       <  2:33738/149‑1                                                    TCAGTTGGCGGTAAGCTTGAGGA‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTGCTCGACCACAATGACGCGCTGGAATCAGCCCGCCAGTGGCTC                                                                                                         <  7:255646/147‑1                                                                                                                                                      AGCCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAG      >  7:6785/1‑149                                                                                                                                                        CCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCG                                    <  1:31374/117‑1                                                                                                                                                        CCACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCG                                    >  2:31374/1‑117                                                                                                                                                         CACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGC                       <  3:119514/129‑1                                                                                                                                                         CACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGC                       >  4:119514/1‑129                                                                                                                                                          ACTGCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCC  <  6:189852/149‑1                                                                                                                                                                                                                                                                                                                CGAGTGTGGCGCTGTACCCGTGGGAGCGGGCTTGCCCGCGAAAGGGCCCTGTCAGTTGGCGGTAAGCTTGAGGT‑TGTCCGCAGCCGGCTTGCCATCGAAGGTGGTCACACCCTCAAGCCAGCGGGCCTTGTCCTCGGGGTGGTCCTTGAGCCACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/364606‑364761 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccactgCTCGACCACAAGGACGCGCTGGAATCAGCCCGCCAGTGGCTCAAGGACCACCCCGAGGACAAGGCCCGCTGGCTTGAGGGTGTGACCACCTTCGATGGCAAGCCGGCTGCGGACAACCTCAAGCTTACCGCCAACTGACAGGGCC  <  NC_002947/364794‑364650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.