| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 378581 | 59 (0.980) | 3 (0.050) | 3/258 | NT | 5.1% | coding (834/1293 nt) | gbcA | glycine‑betaine dioxygenase subunit |
| ? | NC_002947 | = 378616 | 54 (0.930) | coding (799/1293 nt) | gbcA | glycine‑betaine dioxygenase subunit | |||||
AACACGATCATGTGGTCGCCCATGCAGTGGTTCCACGAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/378432‑378581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGGGCACCGTGTCGATGACCATGGACGGCAAGCAGGCCTGCCAGAAGCTGATGGGTCGCATCAA < NC_002947/378616‑378513 AACACGATCATGTGGTCGCCCATGCAGTGGTTCCACGAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAG > 3:267078/1‑149AACACGATCATGTGGTCGCCCATGCAGTGGTTCCACGAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGA < 8:300177/148‑1 GGCAGGGGCAGGATGCGCATCGCGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCGTGCCGTCCATGGTCATCGACACGGGGCCCTTGAGCCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCGCAA < 5:224951/149‑1 TCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGG < 1:278462/99‑1 TCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGG > 2:278462/1‑99 CCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGGGCACCGTGTCGATGACCATGGACGGCAAGCAGGCCTGCCAGAAGCTGATGGGTCGCATCAA < 7:142436/105‑1 CCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGGGCACCGTGTCGATGACCATGGACGGCAAGCAGGCCTGCCAGAAGCTGATGGGTCGCATCAA > 8:142436/1‑105 AACACGATCATGTGGTCGCCCATGCAGTGGTTCCACGAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/378432‑378581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcCACGGCCTGCGTAACCGCATCGTGCGCATGCCGCTGCTCAAGGGCACCGTGTCGATGACCATGGACGGCAAGCAGGCCTGCCAGAAGCTGATGGGTCGCATCAA < NC_002947/378616‑378513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |