New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 378581	59 (0.980)	3 (0.050)	3/258	NT	5.1%	coding (834/1293 nt)	gbcA	glycine‑betaine dioxygenase subunit
	?	NC_002947	= 378616	54 (0.930)					coding (799/1293 nt)	gbcA	glycine‑betaine dioxygenase subunit

GAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCGGGTGCGAACCGTTG  >  NC_002947/378468‑378761                                                                                                                                                      |                                                                                                                                                   gAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTg                                                                                                                                                    >  1:267467/1‑149 (MQ=255)       ggCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCTCACGATGCGGTTAC‑GCAGGCCGTGGCTCtt                                                                                                                                              <  5:58368/149‑1 (MQ=255)       ggCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCtt                                                                                                                                              <  3:339172/149‑1 (MQ=255)         cAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTtgt                                                                                                                                            <  7:137036/149‑1 (MQ=255)                  gATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACg                                                                                                                                   >  3:222881/1‑149 (MQ=255)                   aTGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACgg                                                                                                                                  <  5:259080/149‑1 (MQ=255)                         aTCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGAtctt                                                                                                                            >  5:160866/1‑149 (MQ=255)                         aTCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGAtctt                                                                                                                            >  5:184781/1‑149 (MQ=255)                            gAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACg                                                                                                                                   >  4:39094/1‑139 (MQ=255)                            gAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACg                                                                                                                                   <  3:39094/139‑1 (MQ=255)                            gAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTtctc                                                                                                                         >  1:257374/1‑149 (MQ=255)                            gAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTtctc                                                                                                                         <  2:320984/149‑1 (MQ=255)                             aGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCg                                                                                                                        >  7:245848/1‑149 (MQ=255)                               ccAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGc                                                                                                                      >  8:213123/1‑149 (MQ=255)                                  aGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTc                                                                                                                   <  2:267467/149‑1 (MQ=255)                                   ggTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTcc                                                                                                                  <  4:222881/149‑1 (MQ=255)                                     tCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTcc                                                                                                                  >  5:81961/1‑147 (MQ=255)                                         ggTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAgg                                                                                                              <  5:118195/147‑1 (MQ=255)                                              ttGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGg                                                                                                                                                   <  7:142436‑M2/105‑2 (MQ=255)                                              ttGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGg                                                                                                                                                   >  8:142436‑M2/1‑104 (MQ=255)                                              ttGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAgcggc                                                                                                       <  2:352652/149‑1 (MQ=255)                                              ttGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAgcggc                                                                                                       >  1:286811/1‑149 (MQ=255)                                                gATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGGACGGGATCTTCTCGGCTTCCCAGGCAgcggcg                                                                                                      >  2:15882/1‑148 (MQ=255)                                                 aTGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAgcggcg                                                                                                      >  1:259406/1‑147 (MQ=255)                                                  tGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAg                                                                                                   >  2:325300/1‑149 (MQ=255)                                                      aCCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGTCAGCGGCGGAggcgg                                                                                               <  6:160866/149‑1 (MQ=255)                                                             aGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACAt                                                                                         <  6:184781/148‑1 (MQ=255)                                                               cTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGt                                                                                      <  8:245848/149‑1 (MQ=255)                                                                ttCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTc                                                                                     >  3:170849/1‑149 (MQ=255)                                                                   tGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCtt                                                                                  >  5:218766/1‑149 (MQ=255)                                                                    ggCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCtt                                                                                  >  3:355838/1‑148 (MQ=255)                                                                     gCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCtt                                                                                  <  5:93450/147‑1 (MQ=255)                                                                     gCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTg                                                                                 >  8:45494/1‑148 (MQ=255)                                                                     gCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCACGCAGCGGCGGAGGCGGCCACATGGTCCtt                                                                                  <  6:218766/147‑1 (MQ=255)                                                                      cAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGaa                                                                               >  1:99979/1‑149 (MQ=255)                                                                       aGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAAt                                                                              >  6:337523/1‑149 (MQ=255)                                                                        ggCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAAtt                                                                             >  7:185378/1‑149 (MQ=255)                                                                                 gCCGTCGATTGTCATCGACACGGTGCCCGTGTGCAGCTGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑Cctggctg                                                                    <  8:178938/148‑1 (MQ=255)                                                                                  ccGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCtggctggc                                                                  <  1:15882/149‑1 (MQ=255)                                                                                   cGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGgcg                                                                 <  7:213123/149‑1 (MQ=255)                                                                                    gTCCATGGTCATCGATACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCTGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGCCCACATGGTCCGTGATTA‑CCTGGCTGgcgc                                                                >  6:205322/1‑149 (MQ=255)                                                                                    gTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTcc                                                                                    >  4:65262/1‑130 (MQ=255)                                                                                    gTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTcc                                                                                    <  3:65262/130‑1 (MQ=255)                                                                                        aTGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCgg                                                            <  4:170849/149‑1 (MQ=255)                                                                                         tGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCggg                                                           >  1:151317/1‑149 (MQ=255)                                                                                            tCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCg                                                        >  2:228863/1‑149 (MQ=255)                                                                                               tCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTg                                                     <  4:355838/149‑1 (MQ=255)                                                                                                      ggTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTgtcgt                                              <  2:259406/149‑1 (MQ=255)                                                                                                      ggTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTgtcgt                                              <  4:267078/149‑1 (MQ=255)                                                                                                          cccTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATTCCCTGGCTGGCGCGCGGGTCGTTGGTGTCGTcc                                            <  1:228863/148‑1 (MQ=255)                                                                                                           ccTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGgctcaagggcaccgtgtcgatgaccatggacggcaagcaggcctgccagaagctga                                                                                            >  2:278462‑M2/1‑43 (MQ=255)                                                                                                           ccTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGgctcaagggcaccgtgtcgatgaccatggacggcaagcaggcctgccagaagctga                                                                                            <  1:278462‑M2/99‑57 (MQ=255)                                                                                                            cTTGAGCAGCGGCATGCGCACGATGCGGTTACGGCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCAc                                         >  1:50513/1‑149 (MQ=255)                                                                                                            cTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGCGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACt                                        >  7:316158/1‑149 (MQ=255)                                                                                                             ttGCGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGgctcaagggccccgtgtcgatgaccatggacggcacgcaggcctgccagaagctgatgggtcgcatcaagaacccagaccttggcgcgatgcgcatcctgcccctgcc                                        <  5:224951‑M2/149‑109 (MQ=255)                                                                                                                        cATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGttt                            >  7:220628/1‑149 (MQ=255)                                                                                                                         aTGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTg                           <  2:257374/149‑1 (MQ=255)                                                                                                                               aCGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGcagcag                     >  3:83386/1‑149 (MQ=255)                                                                                                                                     cGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCg                <  6:81961/148‑1 (MQ=255)                                                                                                                                       gTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCgg               >  1:12969/1‑147 (MQ=255)                                                                                                                                       gTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCgg               <  2:12969/147‑1 (MQ=255)                                                                                                                                               aGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCGGGTGCGAAcc      >  2:331287/1‑149 (MQ=255)                                                                                                                                               aGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCGGGTGCGAAcc      >  2:251682/1‑149 (MQ=255)                                                                                                                                                   cGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCGGGTGCGAACCGTTg  >  4:188678/1‑149 (MQ=255)                                                                                                                                                      |                                                                                                                                                   GAGTGCGGCAGGTGCAGGATGCGCATCGAGCCAAGGTCTGGGTTCTTGATGCGACCCATCAGCTTCTGGCAGGCCTGCTTGCCGTCCATGGTCATCGACACGGTGCCCTTGAGCAGCGGCATGCGCACGATGCGGTTAC‑GCAGGCCGTGGCTCTTGTGCAGGTACGGGATCTTCTCGGCTTCCCAGGCAGCGGCGGAGGCGGCCACATGGTCCTTGAATT‑CCTGGCTGGCGCGCGGGTCGTTGGTGTCGTCCCACTCCAGCAGGGTTTGCAGCAGTTCCGGGTGCGAACCGTTG  >  NC_002947/378468‑378761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.