New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1444115	58 (0.960)	4 (0.070)	3/250	NT	6.9%	coding (71/948 nt)	PP_1262	LysR family transcriptional regulator
	?	NC_002947	= 1444148	53 (0.940)					coding (38/948 nt)	PP_1262	LysR family transcriptional regulator

GGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1444009‑1444115 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttgcgTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATACGACCACCGCGAACGTGTCGCGGGCGGTCTCCAACCTGGAAGCCCATCTGCAAACAAGGCTGCTCAACCGTACCACCCGCCGCATTGCGCTGACCGAAG  <  NC_002947/1444148‑1444005                                                                                                                                                                                                                                                             GGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCGTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTG                                                                                                         <  6:226747/148‑1     AGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCGTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATA                                                                                                     <  3:136281/148‑1                        TACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCGTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATA                                                                                                     <  3:300557/129‑1                        TACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCGTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATA                                                                                                     >  4:300557/1‑129                                                                                                        TGCGTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATACGACCACCGCGAACGTGTCGCGGGCGGTCTCCAACCTGGAAGCCCATCTGCAAACAAGGCTGCTCAACCGTACCACCCGCCGCATTGCGCTGACCGAAG  <  1:258913/148‑1                                                                                                                                                                                                                                                             GGTCAGCGCAATGCGGCGGGTGGTACGGTTGAGCAGCCTTGTTTGCAGATGGGCTTCCAGGTTGGAGACCGCCCGCGACACGTTCGCGGTGGTCGTATCCAGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1444009‑1444115 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagttgcgTAGCCCAACTCGGCAGCTTCACTGCCGCTGCGGCGCAACTGGATACGACCACCGCGAACGTGTCGCGGGCGGTCTCCAACCTGGAAGCCCATCTGCAAACAAGGCTGCTCAACCGTACCACCCGCCGCATTGCGCTGACCGAAG  <  NC_002947/1444148‑1444005

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.