New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1812100 =	55 (0.910)	4 (0.070)	4/258	NT	6.8%	coding (318/897 nt)	PP_1615	LysR family transcriptional regulator
	?	NC_002947	1812134 =	57 (0.980)					coding (284/897 nt)	PP_1615	LysR family transcriptional regulator

GGTAACCCTGAGCGAAGCCGGGCAGACCTTCCTGCAGCATTGCCAACGCTTGCAGGATGGCCGTGAGGAAGCGCTGCGCGCCATGGGCGACCTGGCCAGCGAACCCAAGGGCTTGTTGCGCATGACGTGTGCAGTGGCCTACGGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1812250‑1812100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGG  >  NC_002947/1812134‑1812233                                                                                                                                                                                                                                                             GGTAACCCTGAGCGAAGCCGGGCAGACCTTCCTGCAGCATTGCCAACGCTTGCAGGATGGCCGTGAGGAAGCGCTGCGCGCCATGGGCGACCTGGCCAGCGAACCCAAGGGCTTGTTGCGCATGACGTGTGCAGTGGCCTACGGCGAGC                                                                                                        >  6:126075/1‑149                                                                                                        cctatctGCTTGTTGCGCATGACGTGTGCAGTGGCCTACGGCGAGCGCAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGG  <  3:66997/141‑1                                                                                                                CTTGTTGCGCATGACGTGTGCAGTGGCCTACGGCGAGCGCAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGG  >  4:66997/1‑140                                                                                                                          ATGACGTGTGCAGTGGCCTACGGCGAGCGCAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCG                                                               <  5:380187/69‑1                                                                                                                          ATGACGTGTGCAGTGGCCTACGGCGAGCGCAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCG                                                               >  6:380187/1‑69                                                                                                                                                                                                                                                             GGTAACCCTGAGCGAAGCCGGGCAGACCTTCCTGCAGCATTGCCAACGCTTGCAGGATGGCCGTGAGGAAGCGCTGCGCGCCATGGGCGACCTGGCCAGCGAACCCAAGGGCTTGTTGCGCATGACGTGTGCAGTGGCCTACGGCGAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1812250‑1812100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcAACAAGCCCTTGGGTTCGCTGGCCAGGTCGCCCATGGCGCGCAGCGCTTCCTCACGGCCATCCTGCAAGCGTTGGCAATGCTGCAGGAAGGTCTGCCCGG  >  NC_002947/1812134‑1812233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.