New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2095626	67 (1.110)	5 (0.080)	5/264	NT	6.7%	coding (852/1212 nt)	alaA	glutamate‑pyruvate aminotransferase
	?	NC_002947	= 2095675	72 (1.210)					coding (803/1212 nt)	alaA	glutamate‑pyruvate aminotransferase

AGCGCGCCCATCGGTTTCACGCAGCTGACGCCAGGGATGTCGTTGAGCAGTTCGTAGGTGCGGTTGCGCTGCTCCAGCAGGCGGCCCGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2095486‑2095626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCA  <  NC_002947/2095675‑2095625                                                                                                                                                                                                  AGCGCGCCCATCGGTTTCACGCAGCTGACGCCAGGGATGTCGTTGAGCAGTTCGTAGGTGCGGTTGCGCTGCTCCAGCAGGCGGCCCGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATGACATGCTG                                             >  1:58550/1‑149                                                                TTGCGCTGCTCCAGCAGGCGGCCCGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCA  >  1:369040/1‑129                                                                TTGCGCTGCTCCAGCAGGCGGCCCGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCA  <  2:369040/129‑1                                                                                       CGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGC    >  7:277054/1‑104                                                                                       CGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATGACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGC    <  8:277054/104‑1                                                                                                                                                                                                  AGCGCGCCCATCGGTTTCACGCAGCTGACGCCAGGGATGTCGTTGAGCAGTTCGTAGGTGCGGTTGCGCTGCTCCAGCAGGCGGCCCGGCGGCAGCACCAGGTCGTTGATGCTCTGGTAGCCGCCCAGCGCGGTCTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2095486‑2095626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gACATGCTGGCCAACATGCGCCTGTGCGCCAACGTGCCGGCCCAGCATGCCA  <  NC_002947/2095675‑2095625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.