New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2439782	56 (0.930)	3 (0.050)	3/256	NT	5.2%	coding (523/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta
	?	NC_002947	= 2439818	55 (0.950)					coding (559/1176 nt)	pcaF‑II	beta‑ketoadipyl‑CoA thiolase subunit beta

CATGGGCCACGTCAGCATGATGCATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2439631‑2439782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcCTTCGACCGTGGCCTTGTGGGCCAGCTGGTGCGAACGCAA  <  NC_002947/2439818‑2439779                                                                                                                                                                                                  CATGGGCCACGTCAGCATGATGCATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTAGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCT                                             >  4:34928/1‑149     GGCCACGTCAGCATGATGCATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGC                                          <  3:85359/148‑1                        ATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTT                                            >  3:326859/1‑127                        ATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTT                                            <  4:326859/127‑1                                   CCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGC                                              <  7:77003/114‑1                                   CCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGC                                              >  8:77003/1‑114                                            CACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGCCTTCGACCGTGGCCTTGTGGGCCAGCTGGTGCGAACGCAA  <  2:69427/149‑1                                                                          GGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGCCTTCGACCGTGGCCTTGTGGGCCAGCTGGTGCGAACG     <  1:164881/116‑1                                                                          GGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGCCTTCGACCGTGGCCTTGTGGGCCAGCTGGTGCGAACG     >  2:164881/1‑116                                                                                                                                                                                                  CATGGGCCACGTCAGCATGATGCATGGCGTAGACCCCAACCCGCACCTGTCCTTGCATGCCGCCAAGGCTTCCGGGATGATGGGCCTGACTGCAGAAATGCTCGGCAAGATGCACGGCATCACCCGTGAGCAGCAGGACCTGTTCGGCTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2439631‑2439782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttgcCTTCGACCGTGGCCTTGTGGGCCAGCTGGTGCGAACGCAA  <  NC_002947/2439818‑2439779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.