New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2880423 = | 38 (0.630) | 4 (0.070) | 4/254 | NT | 8.6% | coding (265/1176 nt) | PP_2535 | transport protein |
? | NC_002947 | 2880518 = | 49 (0.850) | coding (360/1176 nt) | PP_2535 | transport protein |
GGTCAAACCCATGAACATTGCAGCCACGGCCCCGGCGCGCTTCTCGGGCGGCACCACACTGGCCGCGACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2880575‑2880423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGACCCTGGCCACCATCGGCGGCGTGCCGTTGGCGACCTGGTTGGGTGAAATGCTGGGTTGGC > NC_002947/2880518‑2880633 GGTCAAACCCATGAACATTGCAGCCACGGCCCCGGCGCGCTTCTCGGGCGGCACCACACTGGCCGCGACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGG < 3:237876/149‑1 GGTCAAACCCATGAACATTGCAGCCACGGCCCCGGCGCGCTTCTCGGGCGGCACCACACTGGCCGCGACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGG > 8:183207/1‑149 GCCGCGACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAGTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGAC > 6:204274/1‑149 GACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAGTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGACCCTGG > 3:345139/1‑149 CGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAGTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGACCCTGGCCACCATCGGC < 4:345139/149‑1 GGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAGTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGACCCTGGCCACCATCGGCGGCGTGCCGTTGGCGACCTGGTTGGGTGAAATGCTGGGTTGGC < 5:204274/149‑1 GGTCAAACCCATGAACATTGCAGCCACGGCCCCGGCGCGCTTCTCGGGCGGCACCACACTGGCCGCGACGATCGAGCCGATGCCAAAGAAGGCGCCGTGGTTGAGTGAAGTGACCACGCGGGCCACCAGCAGGCTGGCGTAGTCGCTGGCCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2880575‑2880423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccagTGTGGTGCCGCCCGAGAAGCGCGCCGGGGCCGTGGCTGCAATGTTCATGGGTTTGACCCTGGCCACCATCGGCGGCGTGCCGTTGGCGACCTGGTTGGGTGAAATGCTGGGTTGGC > NC_002947/2880518‑2880633 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |