New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2900970 =	42 (0.700)	4 (0.070)	4/252	NT	9.3%	coding (52/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901018 =	38 (0.670)					coding (100/1908 nt)	quiC	3‑dehydroshikimate dehydratase

CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2901124‑2900970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC  >  NC_002947/2901018‑2901160                                                                                                                                                                                                                                                                                                            CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGC                                                                                                                                                       <  7:158410/149‑1                                                                                                             TCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTG                                             >  7:350777/1‑147                                                                                                                                CAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAT                                                                                                  <  7:188940/75‑1                                                                                                                                CAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAT                                                                                                  >  8:188940/1‑75                                                                                                                                              GCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTC          <  8:350777/149‑1                                                                                                                                                      TTCGAGAACGATCTGCTCTATTACGCTGGCTGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC  >  1:33790/1‑149                                                                                                                                                      TTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAG                   >  1:355466/1‑132                                                                                                                                                      TTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAG                   <  2:355466/132‑1                                                                                                                                                      TTCGAGAACGATCTGCTCGATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGCCCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTGTGAAGGCTGCCGCCGTGCCCGCCTGCAGAAAAACCTCGCCCGCGC  >  8:353260/1‑149                                                                                                                                                        CGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC  <  4:314545/147‑1                                                                                                                                                                                                                                                                                                            CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2901124‑2900970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC  >  NC_002947/2901018‑2901160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.