New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2900970 =	42 (0.700)	4 (0.070)	4/252	NT	9.3%	coding (52/1908 nt)	quiC	3‑dehydroshikimate dehydratase
	?	NC_002947	2901018 =	38 (0.670)					coding (100/1908 nt)	quiC	3‑dehydroshikimate dehydratase

CGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTT  >  NC_002947/2900822‑2901115                                                                                                                                                       |                                                                                                                                                  cgacTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCTGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGc                                                                                                                                                   <  3:229936/149‑1 (MQ=255)     tttACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCg                                                                                                                                                >  8:154044/1‑148 (MQ=255)        gcgcggtcgaggtttttctgcaggcggtcacggcggcagccttcaaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCg                                                                                                                                                <  4:314545‑M1/4‑1 (MQ=255)        gcgcggtcgaggtttttctgcaggcggtcacggcggcagccttcaaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggcagccagcgtaatagagcagatcgttCTCGaa                                                                                                                                              >  1:33790‑M1/144‑149 (MQ=255)        gcgcgggcgaggtttttctgcaggcgggcacggcggcagccttcacagtcgcggaaaggctggaacaaggtgatggcaatgcccagggcggcgcacatctggcgcacctggcgcgggctgccagcgtaatcgagcagatcgttCTCGaa                                                                                                                                              >  8:353260‑M1/144‑149 (MQ=255)                gaggtttttctgcaggcggtcacggcggcagccttcaaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGAAGCCATcgc                                                                                                                                      <  8:350777‑M1/14‑1 (MQ=255)                 taatCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATcgccgc                                                                                                                                   >  8:16936/1‑149 (MQ=255)                         ctgcaggcggtcacggcggcagccttcaaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGaa                                                                                                                                              >  1:355466‑M1/127‑132 (MQ=255)                         ctgcaggcggtcacggcggcagccttcaaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGaa                                                                                                                                              <  2:355466‑M1/6‑1 (MQ=255)                          gTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGttt                                                                                                                          <  3:221120/149‑1 (MQ=255)                             ccATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGa                                                                                                                       <  1:354122/149‑1 (MQ=255)                                 aaaCTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGttt                                                                                                                          <  8:50071/142‑1 (MQ=255)                                 aaaCTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGttt                                                                                                                          >  7:50071/1‑142 (MQ=255)                                       tgACATGGGTTGTTTGCCCGTATTGGACCGTATTCCTCCAACAACAATGAACTCCCGCCATTCATCGTTCGATAGCTAACGTTTTCCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTc                                                                                                                <  1:294027/148‑1 (MQ=255)                                       tgACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTc                                                                                                                >  6:152806/1‑146 (MQ=255)                                       tgACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCgag                                                                                                             <  7:154044/149‑1 (MQ=255)                                       tgACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCga                                                                                                              <  3:226684/148‑1 (MQ=255)                                       tgACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCga                                                                                                              <  5:24635/148‑1 (MQ=255)                                         aCAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTc                                                                                                                >  1:14176/1‑144 (MQ=255)                                           aGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCt                                                                                                         >  5:369764/1‑149 (MQ=255)                                             gggTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCga                                                                                                              <  6:92743/142‑1 (MQ=255)                                             gggTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCga                                                                                                              >  5:92743/1‑142 (MQ=255)                                               gttgttTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCga                                                                                                     <  7:16936/149‑1 (MQ=255)                                                   caaagtcgcggaaaggctggaacaaggtgatggcaatgcccaggtcggcgcacatctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCga                                                                                                     >  7:350777‑M1/101‑147 (MQ=255)                                                     tGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACg                                                                                                <  7:129662/148‑1 (MQ=255)                                                                  ccGTATTCCTCCAACAACAACGAACTCCCTCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTAc                                                                                  <  6:231014/149‑1 (MQ=255)                                                                          ctccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCa                                                                           <  4:81241/148‑1 (MQ=255)                                                                           tccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGc                                                                         >  6:304496/1‑149 (MQ=255)                                                                           tccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGc                                                                         >  1:237271/1‑149 (MQ=255)                                                                             caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc                                                                       >  6:60875/1‑149 (MQ=255)                                                                             caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc                                                                       >  7:165474/1‑149 (MQ=255)                                                                             caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc                                                                       >  3:61184/1‑149 (MQ=255)                                                                               acaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCcgc                                                                     <  2:237271/149‑1 (MQ=255)                                                                                    aaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAg                                                                <  3:2875/149‑1 (MQ=255)                                                                                    aaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAg                                                                <  5:152806/149‑1 (MQ=255)                                                                                           tCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTgcgc                                                          >  6:241175/1‑148 (MQ=255)                                                                                             ccGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTgcgc                                                          >  3:369418/1‑146 (MQ=255)                                                                                                ccATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAtg                                                    >  6:84755/1‑149 (MQ=255)                                                                                                     cAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTgcg                                                <  4:369418/148‑1 (MQ=255)                                                                                                      aGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGcc                                              >  3:314545/1‑149 (MQ=255)                                                                                                        atctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGAAGCCATCGCCGCCGCCGGTTTTg                                                                                                                        >  8:188940‑M1/48‑75 (MQ=255)                                                                                                        atctggcgcacctggcgcgggctgccagcgtaatagagcagatcgttCTCGAAGCCATCGCCGCCGCCGGTTTTg                                                                                                                        <  7:188940‑M1/28‑1 (MQ=255)                                                                                                             gATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGGCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgg                                       <  4:61184/149‑1 (MQ=255)                                                                                                               tCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTggg                                      >  5:76964/1‑148 (MQ=255)                                                                                                                 gCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCAt                                   >  4:309124/1‑149 (MQ=255)                                                                                                                  cTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCAtt                                  >  7:42631/1‑149 (MQ=255)                                                                                                                   tACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgggagatc                                 >  3:359530/1‑144 (MQ=255)                                                                                                                   tACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgg                                       <  4:359530/143‑1 (MQ=255)                                                                                                                                 gAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCtt                       <  5:60875/147‑1 (MQ=255)                                                                                                                                    cGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCAcc                         <  2:249906/142‑1 (MQ=255)                                                                                                                                    cGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCAcc                         >  1:249906/1‑142 (MQ=255)                                                                                                                                             gCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTcc         >  5:74998/1‑149 (MQ=255)                                                                                                                                                 gAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGa     <  5:84755/149‑1 (MQ=255)                                                                                                                                                    aaGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCGTTCCGCGACtt  >  7:126238/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                  CGACTTTACCTGCGAATAATCGATCGTGCCATAAACTGTGACAGGGGTTGTTTGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGT‑‑CCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTT  >  NC_002947/2900822‑2901115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.