New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2900970 = | 42 (0.700) | 4 (0.070) | 4/252 | NT | 9.3% | coding (52/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
? | NC_002947 | 2901018 = | 38 (0.670) | coding (100/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
TGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC > NC_002947/2900874‑2901160 | tGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACg < 7:129662/148‑1 (MQ=255) ccGTATTCCTCCAACAACAACGAACTCCCTCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTAc < 6:231014/149‑1 (MQ=255) ctccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCa < 4:81241/148‑1 (MQ=255) tccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGc > 1:237271/1‑149 (MQ=255) tccAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGc > 6:304496/1‑149 (MQ=255) caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc > 7:165474/1‑149 (MQ=255) caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc > 6:60875/1‑149 (MQ=255) caacaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGccc > 3:61184/1‑149 (MQ=255) acaacaaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCcgc < 2:237271/149‑1 (MQ=255) aaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAg < 5:152806/149‑1 (MQ=255) aaGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAg < 3:2875/149‑1 (MQ=255) tCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTgcgc > 6:241175/1‑148 (MQ=255) ccGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTgcgc > 3:369418/1‑146 (MQ=255) ccATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAtg > 6:84755/1‑149 (MQ=255) cAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTgcg < 4:369418/148‑1 (MQ=255) aGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGcc > 3:314545/1‑149 (MQ=255) gATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGGCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgg < 4:61184/149‑1 (MQ=255) tCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTggg > 5:76964/1‑148 (MQ=255) gCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCAt > 4:309124/1‑149 (MQ=255) cTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCAtt > 7:42631/1‑149 (MQ=255) tACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgggagatc > 3:359530/1‑144 (MQ=255) tACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTgg < 4:359530/143‑1 (MQ=255) gAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCtt < 5:60875/147‑1 (MQ=255) cGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCAcc > 1:249906/1‑142 (MQ=255) cGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCAcc < 2:249906/142‑1 (MQ=255) gCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTcc > 5:74998/1‑149 (MQ=255) gAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGa < 5:84755/149‑1 (MQ=255) aaGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCGTTCCGCGACtt > 7:126238/1‑149 (MQ=255) tcgaagatctcgacgccgtcaaaaccggcggcggcgatggcttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTg > 7:350777‑M2/48‑147 (MQ=255) GCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTg < 7:158410‑M1/149‑1 (MQ=255) tCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTgccgc < 6:369764/149‑1 (MQ=255) ccgccgGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGt > 5:91247/1‑146 (MQ=255) ccgccgGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGt < 6:91247/146‑1 (MQ=255) gccgGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCg > 8:51138/1‑149 (MQ=255) cgGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTCGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCCACCTGGGCATTGCCATCACCTTGTACCAGCCTTACCGCGACTTTGAAGGCTGCCGCAGTGACCGcc > 5:273546/1‑149 (MQ=255) caaaaccggcggcggcgatggcttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAt < 7:188940‑M2/47‑1 (MQ=255) caaaaccggcggcggcgatggcttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGAt > 8:188940‑M2/29‑75 (MQ=255) ggTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCt > 3:93118/1‑149 (MQ=255) gTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTg < 8:165474/149‑1 (MQ=255) tttGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTg > 3:161078/1‑147 (MQ=255) ttGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCa < 5:304496/148‑1 (MQ=255) ttGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCa < 7:40787/148‑1 (MQ=255) cGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCAGCCGTGACCGCCTGCAGaaa > 2:294064/1‑148 (MQ=255) gcgatggcttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTc < 8:350777‑M2/135‑1 (MQ=255) ttcgagAACGATCTGCTCTATTACGCTGGCTGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCgcgc > 1:33790‑M2/7‑149 (MQ=255) ttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAg < 2:355466‑M2/126‑1 (MQ=255) ttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAg > 1:355466‑M2/7‑132 (MQ=255) ttcgagAACGATCTGCTCGATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGCCCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTGTGAAGGCTGCCGCCGTGCCCGCCTGCAGAAAAACCTCGCCCgcgc > 8:353260‑M2/7‑149 (MQ=255) cgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCgcgc < 4:314545‑M2/143‑1 (MQ=255) | TGCCCGAATGGCACCGTATTCCTCCAACAACAAGGAACTCCCGCCATGCAGCGTTCGATCGCTACCGTGTCCTTGAGCGGCACTCTGCCGGAAAAGCTCGAAGCCATCGCCGCCGCCGGTTTTGACGGCGTCGAGATCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGC > NC_002947/2900874‑2901160 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |