| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3590042 = | 49 (0.810) | 4 (0.070) | 3/250 | NT | 8.3% | coding (563/1251 nt) | nicP‑I | porin‑like protein |
| ? | NC_002947 | 3590096 = | 42 (0.740) | coding (617/1251 nt) | nicP‑I | porin‑like protein | |||||
CCAACAAAGCCTTGTTGGTAGATGTCCTCCAGCTGACCGTACCAAAGGCTGACGCTGCTTTGGTTGGCATTGAACGCATAGTCCCCACCCACATAGTTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3590192‑3590042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgttcaACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACCTGG > NC_002947/3590096‑3590242 CCAACAAGGCTTTGTTGGTAGATGTCCTCCAGCTGACCGTACCAAAGGCTGACGCTGCTTTGGTTGGCATTGAACGCATAGTCCCCACCCACATAGTTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTT > 8:59981/1‑149 ATAGTTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCT > 8:62049/1‑149 TTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGT > 3:336240/1‑149 TTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTT > 5:252941/1‑147 TTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTT < 6:252941/147‑1 GTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACC > 4:39036/1‑149 TTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACCT > 3:89187/1‑149 TCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACCTG > 2:19674/1‑149 CAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACCTGG > 7:104102/1‑149 CCAACAAAGCCTTGTTGGTAGATGTCCTCCAGCTGACCGTACCAAAGGCTGACGCTGCTTTGGTTGGCATTGAACGCATAGTCCCCACCCACATAGTTGAACGCGTCGCTTTCGGCCTGTCGCATCGGCACATGGCCGAGCATCGCGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3590192‑3590042‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgttcaACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTGTTGGCCTGAAGCACAGCAAACCCGTCGGCGACTGGGTACTCAGTGCCAACCTGG > NC_002947/3590096‑3590242 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |