New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3590042 =	49 (0.810)	4 (0.070)	3/250	NT	8.3%	coding (563/1251 nt)	nicP‑I	porin‑like protein
	?	NC_002947	3590096 =	42 (0.740)					coding (617/1251 nt)	nicP‑I	porin‑like protein

TGCCGGTGCTGACCTTCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTG  >  NC_002947/3589895‑3590188                                                                                                                                                    |                                                                                                                                                   ccaggttggcactgagtacccagtcgccgacgggtttgctgtgcttcaggccaacaaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTg                                                                                                                                                   >  7:104102‑M1/148‑149 (MQ=255)  caggttggcactgagtacccagtcgccgacgggtttgctgtgcttcaggccaacaaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGa                                                                                                                                                  >  2:19674‑M1/147‑149 (MQ=255)   aggttggcactgagtacccagtcgccgacgggtttgctgtgcttcaggccaacaaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGaa                                                                                                                                                 >  3:89187‑M1/146‑149 (MQ=255)    ggttggcactgagtacccagtcgccgacgggtttgctgtgcttcaggccaacaaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGAAc                                                                                                                                                >  4:39036‑M1/145‑149 (MQ=255)        gCTGACCTTCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGa                                                                                                                                            >  5:234399/1‑149 (MQ=255)              cTTCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCg                                                                                                                                      >  2:177773/1‑149 (MQ=255)              cTTCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGAGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGAAGAACGCGATGCTCg                                                                                                                                      >  2:183488/1‑149 (MQ=255)               ttCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCgg                                                                                                                                     >  5:342335/1‑149 (MQ=255)                    tGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCAtg                                                                                                                                >  4:186780/1‑149 (MQ=255)                         ttCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGcc                                                                                                                            >  6:372725/1‑148 (MQ=255)                          tCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGa                                                                                                                          >  7:59981/1‑149 (MQ=255)                            gCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATg                                                                                                                        >  7:347468/1‑149 (MQ=255)                            gCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATg                                                                                                                        >  3:284019/1‑149 (MQ=255)                             ccTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGc                                                                                                                       >  2:271605/1‑149 (MQ=255)                                      acccaccTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCCATGGCAAGATCAACGCGATGGTCGGCCAt                                                                                                                                 >  3:241083/1‑130 (MQ=255)                                        ccaccTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGa                                                                                                             >  4:61838/1‑148 (MQ=255)                                          accTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAg                                                                                                          >  7:104720/1‑149 (MQ=255)                                          accTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAg                                                                                                          <  3:247944/149‑1 (MQ=255)                                             tATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGTACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGa                                                                                                       >  8:323957/1‑149 (MQ=255)                                               tCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGAc                                                                                                      <  5:200805/148‑1 (MQ=255)                                                 aGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGTACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGAcgc                                                                                                    <  7:323957/148‑1 (MQ=255)                                                 aGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGAcgc                                                                                                    <  1:247420/148‑1 (MQ=255)                                                   ggCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGtt                                                                                                 <  7:179991/149‑1 (MQ=255)                                                      gTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCaa                                                                                              <  3:62927/149‑1 (MQ=255)                                                      acaaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCaa                                                                                              >  3:336240‑M1/95‑149 (MQ=255)                                                        aaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCaa                                                                                              <  6:252941‑M1/55‑1 (MQ=255)                                                        aaagccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCaa                                                                                              >  5:252941‑M1/93‑147 (MQ=255)                                                          gTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACACACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTAGGCCATGTGCAGATGCGACAGGCCGAAAGCGACGCGTTCAACTAt                                                                                          >  1:164647/1‑149 (MQ=255)                                                          agccttgttggtagatgtcctccagctgaccgtaccaaaggctgacgctgctttggttggcattgaacgcatagtccccacccacatagtTGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTAt                                                                                          >  8:62049‑M1/91‑149 (MQ=255)                                                                    gtcgGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAGGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGtgggtggg                                                                                 >  2:203154/1‑148 (MQ=255)                                                                     tcgGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGa                                                                               <  6:342335/149‑1 (MQ=255)                                                                           aTCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGc                                                                         <  4:284019/149‑1 (MQ=255)                                                                              gACGGGCTGACTATGCAGGCCGGGCACTTGAAAGGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGt                                                                       <  1:203154/148‑1 (MQ=255)                                                                              gACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGATGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGt                                                                       <  8:104720/148‑1 (MQ=255)                                                                               aCGTGCTGACTTTTCAGGCCGGGCACTTGAAAAGCAGCCACCTGCGTTACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTTGGTGTGGACTATGCGTTc                                                                     <  2:164647/149‑1 (MQ=255)                                                                               aCGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTc                                                                     <  1:183488/149‑1 (MQ=255)                                                                               aCGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTc                                                                     <  1:177773/149‑1 (MQ=255)                                                                                   gCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATg                                                                 <  8:347468/149‑1 (MQ=255)                                                                                        cTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGccaac                                                            <  6:253392/149‑1 (MQ=255)                                                                                             cAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCaaa                                                        <  1:271605/148‑1 (MQ=255)                                                                                              aGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAag                                                       >  2:324930/1‑148 (MQ=255)                                                                                               ggCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAag                                                       >  1:46886/1‑147 (MQ=255)                                                                                                 ccGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAagcagc                                                   <  5:372725/149‑1 (MQ=255)                                                                                                   gggCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCg                                                  >  8:276561/1‑148 (MQ=255)                                                                                                         ttGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCt                                           >  3:265070/1‑149 (MQ=255)                                                                                                            aaaaGCACCCACCTGCGTAACGAAGGTGGTGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCttt                                         <  5:245592/148‑1 (MQ=255)                                                                                                              aaGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTgg                                       >  4:40192/1‑148 (MQ=255)                                                                                                              aaGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGt                                      <  1:324930/149‑1 (MQ=255)                                                                                                                    ccaccTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGtt                                                                      >  5:35304/1‑111 (MQ=255)                                                                                                                    ccaccTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGt                                 >  1:7136/1‑148 (MQ=255)                                                                                                                    ccaccTGAGTAACGAAGGTGGCGATGGCAAGTTGAACGCGATGCTCGTCCATGTGCCGATGCGAGAGGCCGAAAGCTACGCGTTCAACTATGTGGGTGGGGACTATGCGtt                                                                      <  6:35304/111‑1 (MQ=255)                                                                                                                         tGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTg                           >  4:132504/1‑149 (MQ=255)                                                                                                                           cGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTgg                          <  3:40192/148‑1 (MQ=255)                                                                                                                             tAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTggag                        >  7:73385/1‑148 (MQ=255)                                                                                                                                cGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACa                    <  2:7136/149‑1 (MQ=255)                                                                                                                                              gCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAgg       <  6:234399/148‑1 (MQ=255)                                                                                                                                              gCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGc      >  3:147517/1‑149 (MQ=255)                                                                                                                                                aaGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCtt    >  6:194961/1‑149 (MQ=255)                                                                                                                                                  gATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTttg  >  6:75735/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TGCCGGTGCTGACCTTCAGTGATATTCGCCTGTTGCCACCCACCTATCAGGGCGTGAGTTTGAGCTCGTCGGAAATCGACGGGCTGACTATGCAGGCCGGGCACTTGAAAAGCACCCACCTGCGTAACGAAGGTGGCGATGGCAAGATGAACGCGATGCTCGGCCATGTGCCGATGCGACAGGCCGAAAGCGACGCGTTCAACTATGTGGGTGGGGACTATGCGTTCAATGCCAACCAAAGCAGCGTCAGCCTTTGGTACGGTCAGCTGGAGGACATCTACCAACAAGGCTTTG  >  NC_002947/3589895‑3590188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.