| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3605651 = | 40 (0.660) | 5 (0.090) | 5/260 | NT | 12.3% | coding (871/1041 nt) | PP_3180 | Smp‑30/Cgr1 family protein |
| ? | NC_002947 | 3605686 = | 32 (0.540) | coding (906/1041 nt) | PP_3180 | Smp‑30/Cgr1 family protein | |||||
GCGACGCCGCCCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3605799‑3605651‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cg‑‑‑‑‑gG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACA > NC_002947/3605686‑3605807 GCGACGCCGCGCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG < 7:35978/148‑1GCGACGCCGCCCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑G < 4:264849/149‑1 CGACGCCGCCCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑G > 5:268771/1‑148 GACGCCGCCCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑G > 6:235476/1‑147 GTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACGGTACTGGCATCAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCC > 4:8490/1‑149 GGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑GG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGG > 8:273285/1‑149 CATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑GG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGC > 3:53384/1‑145 CATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑GG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGC < 4:53384/145‑1 GCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑GG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACA < 7:273285/149‑1 GCGACGCCGCCCGTTTCCGGGCGGATGGCATACAGGTCGCCAGCGTCCGGATAATGGTGCAGGTCTTCTGGCGTCATGTCGTAACGCGCGGTGCTGATGTACAAGGTGTTCATCCCGGGCCCGCCAAAGCAGCAGCTGGTGGGGCACG‑‑‑‑‑G‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3605799‑3605651‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cg‑‑‑‑‑gG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACA > NC_002947/3605686‑3605807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |