New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3605651 =	40 (0.660)	5 (0.090)	5/260	NT	12.3%	coding (871/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3605686 =	32 (0.540)					coding (906/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein

GCCGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGC  >  NC_002947/3605507‑3605799                                                                                                                                                 |                                                                                                                                                          gCCGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGt                                                                                                                                                   <  7:15327/148‑1 (MQ=255) gCCGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTg                                                                                                                                                  >  6:165936/1‑149 (MQ=255)  ccGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTg                                                                                                                                                  <  4:323314/148‑1 (MQ=255)  ccGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGc                                                                                                                                                 <  4:233003/149‑1 (MQ=255)   cgtaaCCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGc                                                                                                                                                 <  5:147251/145‑1 (MQ=255)         ccccGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCccac                                                                                                                                            >  6:321848/1‑147 (MQ=255)         ccccGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCccac                                                                                                                                            >  6:131823/1‑147 (MQ=255)          cccGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAg                                                                                                                                         <  6:57657/149‑1 (MQ=255)               cgAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAgctgct                                                                                                                                    >  7:60054/1‑149 (MQ=255)                gAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAgctgctg                                                                                                                                   >  6:326056/1‑149 (MQ=255)                     ggggCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGc                                                                                                                                                 >  3:338193/1‑130 (MQ=255)                     ggggCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGc                                                                                                                                                 <  4:338193/130‑1 (MQ=255)                       tgtgcctggcgacgccgcccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGc                                                                                                                            <  7:273285‑M1/27‑1 (MQ=255)                       ggcggcCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACTATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGc                                                                                                                            <  7:33857/149‑1 (MQ=255)                       ggcggcCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGc                                                                                                                            <  2:320595/149‑1 (MQ=255)                              ggATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCg                                                                                                                     <  5:326056/149‑1 (MQ=255)                               gATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCACACCAGCTGCTGCTTTGGCGGGCCCgg                                                                                                                    >  4:253126/1‑149 (MQ=255)                                       gcccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATg                                                                                                                >  3:53384‑M1/107‑145 (MQ=255)                                       gcccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATg                                                                                                                <  4:53384‑M1/39‑1 (MQ=255)                                        gcgcTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGTATGaaga                                                                                                            <  5:131823/148‑3 (MQ=255)                                        gcgcTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGaa                                                                                                              <  5:165936/146‑1 (MQ=255)                                         ccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACAcc                                                                                                          >  8:273285‑M1/105‑149 (MQ=255)                                           cTGGACGGCGTAGGCGGTCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTTCGACCGCGTCGGGTACCTGTCCGACCTTGTGTTGATGCCAGTAC‑‑‑‑‑GGTGCCGCTCCAGGTGGTGCTTTTGCGGGCTCGGGATGATCACGtt                                                                                                        <  8:276984/149‑1 (MQ=255)                                             ggACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTg                                                                                                       >  4:95492/1‑148 (MQ=255)                                              gACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGt                                                                                                      <  5:203738/148‑1 (MQ=255)                                              gACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGAATGAACACCTTGTa                                                                                                     >  2:104408/1‑149 (MQ=255)                                                    ggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttgatgcCAGTACCGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTAc                                                                                                    >  4:8490‑M1/94‑149 (MQ=255)                                                               gtgGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGt                                                                                     >  3:370085/1‑148 (MQ=255)                                                                tgGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTa                                                                                   >  6:329637/1‑149 (MQ=255)                                                                 gggTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTa                                                                                   <  5:321848/148‑1 (MQ=255)                                                                   gtgtGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGa                                                                                <  3:95492/149‑1 (MQ=255)                                                                    tgtgCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGAc                                                                               <  3:253126/149‑1 (MQ=255)                                                                        ccAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGa                                                                           >  7:268477/1‑149 (MQ=255)                                                                          aGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACg                                                                         >  5:235476/1‑149 (MQ=255)                                                                                   gCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGAc                                                                <  5:267162/149‑1 (MQ=255)                                                                                    cAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGAcc                                                               >  6:268771/1‑149 (MQ=255)                                                                                        tgcctgcTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCa                                                           >  1:164611/1‑149 (MQ=255)                                                                                              ctgcGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCAtt                                                      <  2:17877/148‑1 (MQ=255)                                                                                                 cgcTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATcc                                                  >  2:41095/1‑149 (MQ=255)                                                                                                          cGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTgg                                         >  2:111302/1‑149 (MQ=255)                                                                                                            ccACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCg                                       >  1:206858/1‑149 (MQ=255)                                                                                                              aCGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGAc                                     >  2:204923/1‑149 (MQ=255)                                                                                                                        gaccgaccAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCa                           >  6:276006/1‑149 (MQ=255)                                                                                                                        gaccgaccAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCa                           >  1:14805/1‑149 (MQ=255)                                                                                                                                    gtTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGaaa               <  8:60054/149‑1 (MQ=255)                                                                                                                                     ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTAt                               <  6:210548/132‑1 (MQ=255)                                                                                                                                     ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTAt                               >  5:210548/1‑132 (MQ=255)                                                                                                                                     ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAAc              >  2:88519/1‑149 (MQ=255)                                                                                                                                                 C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTc    >  6:235476‑M1/1‑147 (MQ=255)                                                                                                                                                 C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCg   >  5:268771‑M1/1‑148 (MQ=255)                                                                                                                                                 C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGc  <  4:264849‑M1/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                          GCCGAAACCCCCGCCGAACTGGGGCGGCCGGATGGTCTGGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGGATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATGCCATCCGCCCGGAAACGGGCGGCGTCGC  >  NC_002947/3605507‑3605799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.