New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3605651 =	40 (0.660)	5 (0.090)	5/260	NT	12.3%	coding (871/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein
	?	NC_002947	3605686 =	32 (0.540)					coding (906/1041 nt)	PP_3180	Smp‑30/Cgr1 family protein

GGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGTTGCAC  >  NC_002947/3605545‑3605831                                                                                                                                                   |                                                                                                                                                    gcccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATg                                                                                                                                                 <  4:53384‑M1/39‑1 (MQ=255) gcccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATg                                                                                                                                                 >  3:53384‑M1/107‑145 (MQ=255)  gcgcTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGT‑ATGaaga                                                                                                                                             <  5:131823/148‑3 (MQ=255)  gcgcTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGaa                                                                                                                                               <  5:165936/146‑1 (MQ=255)   ccgtttccgggcggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttcatcC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACAcc                                                                                                                                           >  8:273285‑M1/105‑149 (MQ=255)     cTGGACGGCGTAGGCGGTCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTTCGACCGCGTCGGGTACCTGTCCGACCTTGTGTTGATGCCAGTAC‑‑‑‑‑GGTGCCGCTCCAGGTGGTGCTTTTGCGGGCTCGGG‑ATGATCACGtt                                                                                                                                         <  8:276984/149‑1 (MQ=255)       ggACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTg                                                                                                                                        >  4:95492/1‑148 (MQ=255)        gACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGt                                                                                                                                       <  5:203738/148‑1 (MQ=255)        gACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGA‑ATGAACACCTTGTa                                                                                                                                      >  2:104408/1‑149 (MQ=255)              ggatggcatacaggtcgccagcgtccggataatggtgcaggtcttctggcgtcatgtcgtaacgcgcggtgctgatgtacaaggtgttgatgcCAGTACCGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTAc                                                                                                                                     >  4:8490‑M1/94‑149 (MQ=255)                         gtgGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGt                                                                                                                      >  3:370085/1‑148 (MQ=255)                          tgGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTa                                                                                                                    >  6:329637/1‑149 (MQ=255)                           gggTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTa                                                                                                                    <  5:321848/148‑1 (MQ=255)                             gtgtGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGa                                                                                                                 <  3:95492/149‑1 (MQ=255)                              tgtgCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGAc                                                                                                                <  3:253126/149‑1 (MQ=255)                                  ccAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGa                                                                                                            >  7:268477/1‑149 (MQ=255)                                    aGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACg                                                                                                          >  5:235476/1‑149 (MQ=255)                                             gCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGAc                                                                                                 <  5:267162/149‑1 (MQ=255)                                              cAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGAcc                                                                                                >  6:268771/1‑149 (MQ=255)                                                  tgcctgcTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCa                                                                                            >  1:164611/1‑149 (MQ=255)                                                        ctgcGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCAtt                                                                                       <  2:17877/148‑1 (MQ=255)                                                           cgcTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATcc                                                                                   >  2:41095/1‑149 (MQ=255)                                                                    cGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTgg                                                                          >  2:111302/1‑149 (MQ=255)                                                                      ccACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCg                                                                        >  1:206858/1‑149 (MQ=255)                                                                        aCGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGAc                                                                      >  2:204923/1‑149 (MQ=255)                                                                                  gaccgaccAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCa                                                           >  1:14805/1‑149 (MQ=255)                                                                                  gaccgaccAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCa                                                           >  6:276006/1‑149 (MQ=255)                                                                                           gtacaaggtgttcatcccgggcccgccaaagcagcagctggtggggcacggtactgGCATCAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATcc                                                        >  4:8490‑M2/57‑149 (MQ=255)                                                                                              gtTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGaaa                                               <  8:60054/149‑1 (MQ=255)                                                                                               ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTAt                                                                >  5:210548/1‑132 (MQ=255)                                                                                               ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTAt                                                                <  6:210548/132‑1 (MQ=255)                                                                                               ttGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAAc                                              >  2:88519/1‑149 (MQ=255)                                                                                                      ggtgttcatcccgggcccgccaaagcagcagctggtggggcacggG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACgg                                            >  8:273285‑M2/46‑149 (MQ=255)                                                                                                           C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTc                                    >  6:235476‑M1/1‑147 (MQ=255)                                                                                                           C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCg                                   >  5:268771‑M1/1‑148 (MQ=255)                                                                                                           C‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGc                                  <  4:264849‑M1/149‑1 (MQ=255)                                                                                                            catcccgggcccgccaaagcagcagctggtggggcacggG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGggc                                          >  3:53384‑M2/40‑145 (MQ=255)                                                                                                            catcccgggcccgccaaagcagcagctggtggggcacggG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGggc                                          <  4:53384‑M2/106‑1 (MQ=255)                                                                                                                 CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGCGCGGCGTCGc                                  <  7:35978‑M1/148‑1 (MQ=255)                                                                                                                       ccaccaGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCCGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGcac                           <  8:268477/149‑1 (MQ=255)                                                                                                                        gccaaagcagcagctggtggggcacggG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGcaca                          <  7:273285‑M2/122‑1 (MQ=255)                                                                                                                         accaGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAg                         >  1:290939/1‑149 (MQ=255)                                                                                                                           caGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGCCGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCt                       <  4:370085/149‑1 (MQ=255)                                                                                                                              ctgctgctTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCAGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTc                     >  2:55957/1‑148 (MQ=255)                                                                                                                                 ctgctTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAg                  <  6:336715/148‑1 (MQ=255)                                                                                                                                           gggCCCGGA‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGt       <  1:104408/149‑1 (MQ=255)                                                                                                                                            ggCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGtt      >  3:176389/1‑149 (MQ=255)                                                                                                                                            gccccGGT‑ATTAACACTTTTTAAATCCGCACGGGGGGTTAGGAAATGCCGCAATAATACTTGAACCATTATCCGTACGGTGCGTATTTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGtt      <  1:111302/147‑1 (MQ=255)                                                                                                                                             gCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGTTg     <  3:264849/149‑1 (MQ=255)                                                                                                                                               ccGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGTTGCa   >  7:118937/1‑149 (MQ=255)                                                                                                                                                cGGG‑ATTAACACATTGTACATCCGCACCGCGCGTTACCCCATGCCGCCAGACCACCCGCACCATTATCCGGCCGGTGGCGCCCTG‑ATGCCCATCCCCCCGTAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGTTGCAc  <  2:164611/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    GGCGCTGGACCGCGAAGGCGGGCTGTGGGTGTGCCAGTACCATGGCAGCTGCCTGCTGCGCTACGACCGCCACGGGTACCTGACCGACCAGGTGTTGATGCCAGTAC‑‑‑‑‑CGTGCCCCACCAGCTGCTGCTTTGGCGGGCCCGGG‑ATGAACACCTTGTACATCAGCACCGCGCGTTACGACATGACGCCAGAAGACCTGCACCATTATCCGGACGCTGGCGACCTGTATG‑CCATCCGCCCGGAAACGGGCGGCGTCGCCAGGCACAGCTTCAAGGAATAAGCGGTTGCAC  >  NC_002947/3605545‑3605831

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.