New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3878852	37 (0.620)	4 (0.070)	4/254	NT	10.8%	coding (687/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3878889	31 (0.540)					coding (724/3180 nt)	mexF	multidrug RND transporter MexF

CCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3878742‑3878852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGGGCAGGCGGCGCGCCCAGCTGGCCGGCGGCCACCTGGCGGTTCTGCTCGCGGATTGCCGCGACCACATCACTGGCCGTCAGGTTGCGCGAAGCGGTCTTGTTC  <  NC_002947/3878889‑3878744                                                                                                                                                                                                                                                                   CCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAG                                                                                                              >  4:269882/1‑149      CAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGG                                                                                                         >  4:17099/1‑149       AAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGG                                                                                                        <  3:17099/149‑1         GACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGG                                                                                                                                                     >  5:371085/1‑102         GACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGG                                                                                                                                                     <  6:371085/102‑1            CGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGGGCAGG                                                                                                   <  3:269882/149‑1                                                                                                          CCAGGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGGGCAGGCGGCGCGCCCAGCTGGCCGGCGGCCACCTGGCGGTTCTGCTCGCGGATTGCCGCGACCACATCACTGGCCGTCAGGTTGCGCGAAGCGGTCTTG     >  7:126033/1‑149                                                                                                             GGCGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGGGCAGGCGGCGCGCCCAGCTGGCCGGCGGCCACCTGGCGGTTCTGCTCGCGGATTGCCGCGACCACATCACTGGCCGTCAGGTTGCGCGAAGCGGTCTTGTTC  <  4:317938/149‑1                                                                                                                                                                                                                                                                   CCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3878742‑3878852 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaggcGGCCTTGGGTATTGATCGACAGCTGGAAGCTGGTCGAGCCTGGGGCAGGCGGCGCGCCCAGCTGGCCGGCGGCCACCTGGCGGTTCTGCTCGCGGATTGCCGCGACCACATCACTGGCCGTCAGGTTGCGCGAAGCGGTCTTGTTC  <  NC_002947/3878889‑3878744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.