New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3878852	37 (0.620)	4 (0.070)	4/254	NT	10.8%	coding (687/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3878889	31 (0.540)					coding (724/3180 nt)	mexF	multidrug RND transporter MexF

CCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTGGC  >  NC_002947/3878741‑3879037                                                                                                                                                     |                                                                                                                                                     cccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc                                                                                                                                                      >  7:199782/1‑149 (MQ=255) cccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc                                                                                                                                                      >  3:56500/1‑149 (MQ=255)    gAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcc                                                                                                                                                   <  4:317938‑M2/149‑4 (MQ=255)       cAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctgg                                                                                                                                                >  7:126033‑M2/1‑143 (MQ=255)        aaGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGCCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGt                                                                                                                                               <  3:328959/149‑1 (MQ=255)             cGCTTCGCGCAACCTGACGGCCAGTGATGTGGTTGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc                                                                                                                                           >  7:5046/1‑148 (MQ=255)             cGCTTAGCGCAACATGACTGCCAGTGATGTGGTCGCGGCAATGCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc                                                                                                                                           <  4:271205/148‑1 (MQ=255)               cTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg                                                                                                                                        <  1:89161/149‑1 (MQ=255)                  cgcgCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAgg                                                                                                                                       <  2:316512/147‑1 (MQ=255)                   gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGTaa                                                                                                                                     <  2:343840/148‑1 (MQ=255)                   gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGaa                                                                                                                                     <  8:5046/148‑1 (MQ=255)                             aCGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                                                            <  4:56500/147‑1 (MQ=255)                                gCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAca                                                                                                                        >  7:30038/1‑148 (MQ=255)                                  cAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAcatca                                                                                                                     >  2:329458/1‑149 (MQ=255)                                          tgGTCGGGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCATCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCcgc                                                                                                             <  5:61061/149‑1 (MQ=255)                                          tgGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAACAGTTCGAAACCATCATCATCggc                                                                                                             >  6:61061/1‑149 (MQ=255)                                                   cAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                                                            <  2:187554/125‑1 (MQ=255)                                                   cAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                                                            >  1:187554/1‑125 (MQ=255)                                                               aGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGAt                                                                                         >  7:146874/1‑148 (MQ=255)                                                                 aaCCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCAc                                                                                      >  1:26342/1‑149 (MQ=255)                                                                   ccGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCCGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCAccc                                                                                    >  5:385829/1‑149 (MQ=255)                                                                       cAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCt                                                                                <  2:151689/149‑1 (MQ=255)                                                                          gTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGa                                                                              >  8:48662/1‑148 (MQ=255)                                                                           tGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGaa                                                                             >  6:161945/1‑148 (MQ=255)                                                                                        gCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCggg                                                               <  3:317938/149‑1 (MQ=255)                                                                                                 gccgccTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAcatca                                                                                                                     >  2:95511/1‑86 (MQ=255)                                                                                                     ccTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcg                                                  <  3:269882‑M2/149‑101 (MQ=255)                                                                                                      cTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTc                                                  >  7:178061/1‑148 (MQ=255)                                                                                                       tGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGc                                                                                              <  6:379650/103‑1 (MQ=255)                                                                                                       tGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGc                                                                                              >  5:379650/1‑103 (MQ=255)                                                                                                          cccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtctt                                             <  3:17099‑M2/149‑106 (MQ=255)                                                                                                           ccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttg                                            >  4:17099‑M2/1‑43 (MQ=255)                                                                                                           ccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGCTCGAACTCGGCTccagc                                              >  8:129572/1‑147 (MQ=255)                                                                                                                cTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttgttcgg                                       >  4:269882‑M2/1‑38 (MQ=255)                                                                                                                             cAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGcgctcgct                          >  2:310292/1‑149 (MQ=255)                                                                                                                              aGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCgctg                         >  2:88640/1‑149 (MQ=255)                                                                                                                                cTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCgctgct                       <  1:329458/149‑1 (MQ=255)                                                                                                                                     gATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGaac                   >  5:293051/1‑148 (MQ=255)                                                                                                                                        cAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATAATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGaacaac                >  1:328956/1‑148 (MQ=255)                                                                                                                                         aaTACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCa              <  6:293051/149‑1 (MQ=255)                                                                                                                                          aTACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAg             >  7:304828/1‑149 (MQ=255)                                                                                                                                                aaGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCcggcg       <  8:178061/149‑1 (MQ=255)                                                                                                                                                 aGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCcggcgg      <  8:30038/149‑1 (MQ=255)                                                                                                                                                   gccgccTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTg    <  8:146874/149‑1 (MQ=255)                                                                                                                                                    ccgccTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGCTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTgg   <  6:385829/149‑1 (MQ=255)                                                                                                                                                     cgccTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTGGc  <  2:328956/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACGCCCTGCGCTCGCTGCTGAACAACCAGCCGGCGGTGGC  >  NC_002947/3878741‑3879037

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.