New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3878852	37 (0.620)	4 (0.070)	4/254	NT	10.8%	coding (687/3180 nt)	mexF	multidrug RND transporter MexF
	?	NC_002947	= 3878889	31 (0.540)					coding (724/3180 nt)	mexF	multidrug RND transporter MexF

GCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACG  >  NC_002947/3878707‑3879000                                                                                                                                                  |                                                                                                                                                     gCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTc                                                                                                                                                    <  6:269694/148‑1 (MQ=255) gCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGAGGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTc                                                                                                                                                    <  6:269693/148‑1 (MQ=255)   aTGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGAc                                                                                                                                                 >  8:126033/1‑149 (MQ=255)   aTGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGAc                                                                                                                                                 <  8:101615/149‑1 (MQ=255)              ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCa                                                                                                                                        <  2:61511/147‑1 (MQ=255)              ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAg                                                                                                                                       <  6:252292/148‑1 (MQ=255)              ctCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGc                                                                                                                                      >  3:360648/1‑149 (MQ=255)                  cTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTc                                                                                                                                  <  4:360648/149‑1 (MQ=255)                      gcgTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGAt                                                                                                                               >  1:151689/1‑148 (MQ=255)                         tCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAAt                                                                                                                           <  6:360067/149‑1 (MQ=255)                             gctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATa                                                                                                                          <  7:105512/146‑1 (MQ=255)                              ctggACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCa                                                                                                                      <  4:106004/149‑1 (MQ=255)                                 gACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAg                                                                                                                    <  5:212616/148‑1 (MQ=255)                                   cccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc                                                                                                                 >  7:199782/1‑149 (MQ=255)                                   cccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGgcc                                                                                                                 >  3:56500/1‑149 (MQ=255)                                    ccGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCggccttgggtattgatcgacagctggaagctggtcgag                                                                                                                >  4:269882‑M1/1‑111 (MQ=255)                                      gAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcc                                                                                                              <  4:317938‑M2/149‑4 (MQ=255)                                         cAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCggccttgggtattgatcgacagctggaagctggtcgagcctgg                                                                                                           >  4:17099‑M1/1‑106 (MQ=255)                                         cAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctgg                                                                                                           >  7:126033‑M2/1‑143 (MQ=255)                                          aaGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCggccttgggtattgatcgacagctggaagctggtcgagcctggg                                                                                                          <  3:17099‑M1/149‑45 (MQ=255)                                          aaGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGCCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGt                                                                                                          <  3:328959/149‑1 (MQ=255)                                               cGCTTCGCGCAACCTGACGGCCAGTGATGTGGTTGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc                                                                                                      >  7:5046/1‑148 (MQ=255)                                               cGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCggccttgggtattgatcgacagctggaagctggtcgagcctggggcagg                                                                                                     <  3:269882‑M1/149‑50 (MQ=255)                                               cGCTTAGCGCAACATGACTGCCAGTGATGTGGTCGCGGCAATGCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAAc                                                                                                      <  4:271205/148‑1 (MQ=255)                                                 cTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAg                                                                                                   <  1:89161/149‑1 (MQ=255)                                                    cgcgCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAgg                                                                                                  <  2:316512/147‑1 (MQ=255)                                                     gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGTaa                                                                                                <  2:343840/148‑1 (MQ=255)                                                     gcgcAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGaa                                                                                                <  8:5046/148‑1 (MQ=255)                                                               aCGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                       <  4:56500/147‑1 (MQ=255)                                                                  gCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAca                                                                                   >  7:30038/1‑148 (MQ=255)                                                                    cAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAcatca                                                                                >  2:329458/1‑149 (MQ=255)                                                                            tgGTCGGGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCATCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCcgc                                                                        <  5:61061/149‑1 (MQ=255)                                                                            tgGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAACAGTTCGAAACCATCATCATCggc                                                                        >  6:61061/1‑149 (MQ=255)                                                                                     cAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                       >  1:187554/1‑125 (MQ=255)                                                                                     cAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGaa                                                                                       <  2:187554/125‑1 (MQ=255)                                                                                                 aGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGAt                                                    >  7:146874/1‑148 (MQ=255)                                                                                                   aaCCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCAc                                                 >  1:26342/1‑149 (MQ=255)                                                                                                     ccGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCCGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCAccc                                               >  5:385829/1‑149 (MQ=255)                                                                                                         cAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCt                                           <  2:151689/149‑1 (MQ=255)                                                                                                            gTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGa                                         >  8:48662/1‑148 (MQ=255)                                                                                                             tGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGaa                                        >  6:161945/1‑148 (MQ=255)                                                                                                                          gCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCggg                          <  3:317938/149‑1 (MQ=255)                                                                                                                                   gccgccTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAAcatca                                                                                >  2:95511/1‑86 (MQ=255)                                                                                                                                       ccTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcg             <  3:269882‑M2/149‑101 (MQ=255)                                                                                                                                        cTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTc             >  7:178061/1‑148 (MQ=255)                                                                                                                                         tGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGc                                                         <  6:379650/103‑1 (MQ=255)                                                                                                                                         tGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGc                                                         >  5:379650/1‑103 (MQ=255)                                                                                                                                            cccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtctt        <  3:17099‑M2/149‑106 (MQ=255)                                                                                                                                             ccAGGCggccttgggtattgatcgacagctggaagctggtcgagcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttg       >  7:126033‑M1/1‑6 (MQ=255)                                                                                                                                             ccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttg       >  4:17099‑M2/1‑43 (MQ=255)                                                                                                                                             ccAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGCTCGAACTCGGCTccagc         >  8:129572/1‑147 (MQ=255)                                                                                                                                                ggcggccttgggtattgatcgacagctggaagctggtcgagcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttgttc    <  4:317938‑M1/149‑147 (MQ=255)                                                                                                                                                  cTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCgcctggggcaggcggcgcgcccagctggccggcggccacctggcggttctgctcgcggattgccgcgaccacatcactggccgtcaggttgcgcgaagcggtcttgttcgg  >  4:269882‑M2/1‑38 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCATGGGCGACTACTCGCTGCGCGTCTGGCTGGACCCGAACAAGACCGCTTCGCGCAACCTGACGGCCAGTGATGTGGTCGCGGCAATCCGCGAGCAGAACCGCCAGGTGGCCGCCGGCCAGCTGGGCGCGCCGCCTGCCCCAGGCTCGACCAGCTTCCAGCTGTCGATCAATACCCAAGGCCGCCTGGTCAACGAGGAAGAGTTCGAAAACATCATCATCCGCGCCGGTGCCGATGGCGAGATCACCCGCCTGAAAGACATCGCCCGGGTCGAACTCGGCTCCAGCCAGTACG  >  NC_002947/3878707‑3879000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.