New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4187143	41 (0.680)	5 (0.090)	4/256	NT	11.3%	coding (490/1242 nt)	PP_3683	hypothetical protein
	?	NC_002947	= 4187158	39 (0.670)					coding (505/1242 nt)	PP_3683	hypothetical protein

GCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4186991‑4187143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataAGCCCAGATCGTGCCTATCCAAGATGTTCTCGGCGATAGTCGAAAACTCAAAATCTGAACGACCTGAGCGAAGCTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACT  <  NC_002947/4187158‑4187012                                                                                                                                                                                                                                                                                                              GCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTG                                                                                                                                                         <  2:263875/149‑1                               GGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAAGCCCAGATCGTGCCTATCCAAGAT                                                                                                                            <  5:161978/148‑1                                                                                                               TCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAAGCCCAGATCGTGCCTATCCAAGAT                                                                                                                            <  3:252222/68‑1                                                                                                               TCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAAGCCCAGATCGTGCCTATCCAAGAT                                                                                                                            >  4:252222/1‑68                                                                                                                 AGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAAGCCCAGATCGTGCCTATCC                                                                                                                                 >  1:354356/1‑61                                                                                                                 AGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAAGCCCAGATCGTGCCTATCC                                                                                                                                 <  2:354356/61‑1                                                                                                                                                     GGATAAGCCCAGATCGTGCCTATCCAAGATGTTCTCGGCGATAGTCGAAAACTCAAAATCTGAACGACCTGAGCGAAGCTCGTCCACACTAGCAAAATTGCCCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCT      >  7:293715/1‑148                                                                                                                                                        TAAGCCCAGATCATGCCTATCCAAGATGTTCTCGGCGATAGTCGAAAACTCAAAATCTGAACGACCTGAGCGAAGCTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACT  >  3:261177/1‑149                                                                                                                                                                                                                                                                                                              GCTCCGCGGTGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4186991‑4187143 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggataAGCCCAGATCGTGCCTATCCAAGATGTTCTCGGCGATAGTCGAAAACTCAAAATCTGAACGACCTGAGCGAAGCTCGTCCACACTAGCAAAATTGACCGTCCAGGCATGATTGCCGTCCGACTGGATGGCTTGCGTCCAAGCTGACT  <  NC_002947/4187158‑4187012

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.