New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4187143	41 (0.680)	5 (0.090)	4/256	NT	11.3%	coding (490/1242 nt)	PP_3683	hypothetical protein
	?	NC_002947	= 4187158	39 (0.670)					coding (505/1242 nt)	PP_3683	hypothetical protein

AGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAAGCTTCCTTAAACTGG  >  NC_002947/4187012‑4187305                                                                                                                                                   |                                                                                                                                                    aGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCATGATCTGGGCTta                                                                                                                                                   >  3:261177‑M2/1‑147 (MQ=255)     aGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGGCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTtatcc                                                                                                                                                >  7:293715‑M2/1‑143 (MQ=255)      gCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGa                                                                                                                                              <  4:217481/149‑1 (MQ=255)        ttGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGAGCGGAGCTTATCCGAGt                                                                                                                                            >  1:316958/1‑149 (MQ=255)        ttGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATAGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGt                                                                                                                                            >  7:100703/1‑149 (MQ=255)            aCGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCaa                                                                                                                                        <  3:216429/149‑1 (MQ=255)             cGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAg                                                                                                                                       <  4:259265/149‑1 (MQ=255)                aaGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGAc                                                                                                                                    >  4:23079/1‑149 (MQ=255)                             ggACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTcaca                                                                                                                       >  6:325534/1‑149 (MQ=255)                             ggACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTcaca                                                                                                                       <  3:96569/149‑1 (MQ=255)                                cGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGt                                                                                                                    <  2:126279/149‑1 (MQ=255)                                 ggCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATATTGAGTTTTCGACTATCGCAGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGtt                                                                                                                   >  7:245182/1‑149 (MQ=255)                                     aTCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATc                                                                                                               <  1:327149/149‑1 (MQ=255)                                         tGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACg                                                                                                            >  8:319177/1‑148 (MQ=255)                                                   gTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCttt                                                                                                 >  5:17763/1‑149 (MQ=255)                                                          ttGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGgacga                                                                                           <  3:85113/148‑1 (MQ=255)                                                            gCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACt                                                                                         <  8:98253/148‑1 (MQ=255)                                                                     gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGATAACATCTTGGATAGGCACGATGTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTGAGTCGTTGATCACGTACGAGGCTTTGGACGACTCACGAAAtt                                                                                <  3:236883/148‑1 (MQ=255)                                                                     gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtg                                                                               <  6:17763/149‑1 (MQ=255)                                                                     gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtg                                                                               >  6:100209/1‑149 (MQ=255)                                                                      aCGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtgt                                                                              <  2:324958/149‑1 (MQ=255)                                                                      aCGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtgt                                                                              >  7:322214/1‑149 (MQ=255)                                                                           cTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACg                                                                          >  2:83090/1‑148 (MQ=255)                                                                              cGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCa                                                                        <  2:299643/147‑1 (MQ=255)                                                                                 tCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTc                                                                   >  5:115139/1‑149 (MQ=255)                                                                                          tCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                                          >  8:321815/1‑149 (MQ=255)                                                                                           cAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                                          <  5:100209/148‑1 (MQ=255)                                                                                           cAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                                          <  7:321815/148‑1 (MQ=255)                                                                                            aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTc                                                                                        <  3:332330/117‑1 (MQ=255)                                                                                            aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTc                                                                                        >  4:332330/1‑117 (MQ=255)                                                                                            aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                                          <  5:201050/147‑1 (MQ=255)                                                                                            aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                                          >  6:201050/1‑147 (MQ=255)                                                                                               attttAGTTTTCGTCTTTCGCCGAGAACATCTTTGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATc                                                     <  8:322214/148‑1 (MQ=255)                                                                                                  tGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGc                                                   <  2:316958/148‑1 (MQ=255)                                                                                                             cTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCt                                       >  6:228574/1‑149 (MQ=255)                                                                                                                      agaACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAgg                              <  5:325534/149‑1 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctgaacgacctgagcgaagctcgtccacactagcaaaattgaccgtccaggcatgattgccgtccgactggatggcttgcgtcc                          <  5:161978‑M2/148‑124 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctga                                                                                                          <  3:252222‑M2/68‑44 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctga                                                                                                          >  4:252222‑M2/1‑25 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTc                                      >  7:296641/1‑136 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTc                                      <  8:296641/136‑1 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTc                         >  8:11926/1‑149 (MQ=255)                                                                                                                           aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTc                         <  3:23079/149‑1 (MQ=255)                                                                                                                                ggATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatct                                                                                                            >  1:354356‑M2/1‑20 (MQ=255)                                                                                                                                ggATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatct                                                                                                            <  2:354356‑M2/61‑42 (MQ=255)                                                                                                                                ggATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCt                        <  7:319177/145‑1 (MQ=255)                                                                                                                                ggATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGAt                     <  5:228574/148‑1 (MQ=255)                                                                                                                                   tAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATAACGTACGAGGCTTTGGACTACTCACGAAATTGTGACGCAGAGTCGGTCTTTAACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATaa                   >  1:334125/1‑147 (MQ=255)                                                                                                                                        aCGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAAGCTTc            >  1:119840/1‑149 (MQ=255)                                                                                                                                                ggCTTATCCGAGTTCAAGGACTTCCCGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAAGCTTCCTTaaa      <  8:100703/147‑1 (MQ=255)                                                                                                                                                  cTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAACGCTTCCTTAAACTgg  >  5:5416/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                    AGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAAGCTTCCTTAAACTGG  >  NC_002947/4187012‑4187305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.