New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4187143	41 (0.680)	5 (0.090)	4/256	NT	11.3%	coding (490/1242 nt)	PP_3683	hypothetical protein
	?	NC_002947	= 4187158	39 (0.670)					coding (505/1242 nt)	PP_3683	hypothetical protein

TGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAA  >  NC_002947/4187000‑4187290                                                                                                                                                |                                                                                                                                                    tGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTACTGTGGACGAGCTACGCACACGTCGTTCAGATTTTGAGTTTTCGAGTATCCCCGAGAACATCTTGGATAGGCAc                                                                                                                                                >  4:236883/1‑149 (MQ=255)    cGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGAt                                                                                                                                             <  4:163106/149‑1 (MQ=255)         cTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTgg                                                                                                                                         <  4:49375/148‑1 (MQ=255)          ttGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGc                                                                                                                                       >  7:98253/1‑149 (MQ=255)             aGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCATGATCTGGGCTta                                                                                                                                    >  3:261177‑M2/1‑147 (MQ=255)                 aGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGGCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTtatcc                                                                                                                                 >  7:293715‑M2/1‑143 (MQ=255)                  gCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGa                                                                                                                               <  4:217481/149‑1 (MQ=255)                    ttGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGAGCGGAGCTTATCCGAGt                                                                                                                             >  1:316958/1‑149 (MQ=255)                    ttGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATAGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGt                                                                                                                             >  7:100703/1‑149 (MQ=255)                      ggACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAagcccagatcgtgcctatccaagat                                                                                                                            <  5:161978‑M1/148‑26 (MQ=255)                        aCGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCaa                                                                                                                         <  3:216429/149‑1 (MQ=255)                         cGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAg                                                                                                                        <  4:259265/149‑1 (MQ=255)                            aaGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGAc                                                                                                                     >  4:23079/1‑149 (MQ=255)                                         ggACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTcaca                                                                                                        <  3:96569/149‑1 (MQ=255)                                         ggACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTcaca                                                                                                        >  6:325534/1‑149 (MQ=255)                                            cGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGt                                                                                                     <  2:126279/149‑1 (MQ=255)                                             ggCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATATTGAGTTTTCGACTATCGCAGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGtt                                                                                                    >  7:245182/1‑149 (MQ=255)                                                 aTCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATc                                                                                                <  1:327149/149‑1 (MQ=255)                                                     tGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACg                                                                                             >  8:319177/1‑148 (MQ=255)                                                               gTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCttt                                                                                  >  5:17763/1‑149 (MQ=255)                                                                      ttGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGgacga                                                                            <  3:85113/148‑1 (MQ=255)                                                                        gCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACt                                                                          <  8:98253/148‑1 (MQ=255)                                                                                 gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGATAACATCTTGGATAGGCACGATGTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTGAGTCGTTGATCACGTACGAGGCTTTGGACGACTCACGAAAtt                                                                 <  3:236883/148‑1 (MQ=255)                                                                                 gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtg                                                                <  6:17763/149‑1 (MQ=255)                                                                                 gACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtg                                                                >  6:100209/1‑149 (MQ=255)                                                                                  aCGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtgt                                                               >  7:322214/1‑149 (MQ=255)                                                                                  aCGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATtgt                                                               <  2:324958/149‑1 (MQ=255)                                                                                       cTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACg                                                           >  2:83090/1‑148 (MQ=255)                                                                                          cGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCa                                                         <  2:299643/147‑1 (MQ=255)                                                                                             tCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTc                                                    >  5:115139/1‑149 (MQ=255)                                                                                                      tCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAagcccagatcgtgcctatccaagat                                                                                                                            <  3:252222‑M1/68‑26 (MQ=255)                                                                                                      tCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAagcccagatcgtgcctatccaagat                                                                                                                            >  4:252222‑M1/1‑43 (MQ=255)                                                                                                      tCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                           >  8:321815/1‑149 (MQ=255)                                                                                                       cAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                           <  7:321815/148‑1 (MQ=255)                                                                                                       cAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                           <  5:100209/148‑1 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAagcccagatcgtgcctatcc                                                                                                                                 >  1:354356‑M1/1‑41 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAagcccagatcgtgcctatcc                                                                                                                                 <  2:354356‑M1/61‑21 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTc                                                                         <  3:332330/117‑1 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTc                                                                         >  4:332330/1‑117 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                           <  5:201050/147‑1 (MQ=255)                                                                                                        aGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCa                                           >  6:201050/1‑147 (MQ=255)                                                                                                           attttAGTTTTCGTCTTTCGCCGAGAACATCTTTGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATc                                      <  8:322214/148‑1 (MQ=255)                                                                                                              tGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGc                                    <  2:316958/148‑1 (MQ=255)                                                                                                                         cTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCt                        >  6:228574/1‑149 (MQ=255)                                                                                                                                  agaACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAgg               <  5:325534/149‑1 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctgaacgacctgagcgaagctcgtccacactagcaaaattgaccgtccaggcatgattgccgtccgactggatggcttgcgtcc           <  5:161978‑M2/148‑124 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctga                                                                                           <  3:252222‑M2/68‑44 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatctga                                                                                           >  4:252222‑M2/1‑25 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTc                       >  7:296641/1‑136 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTc                       <  8:296641/136‑1 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTc          <  3:23079/149‑1 (MQ=255)                                                                                                                                       aTCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTc          >  8:11926/1‑149 (MQ=255)                                                                                                                                            ggATAagcccagatcgtgcctatccaagatgttctcggcgatagtcgaaaactcaaaatctgaacgacctgagcgaagctcgtccacactagcaaaattgcccgtccaggcatgattgccgtccgactggatggcttgcgtccaagct      >  7:293715‑M1/1‑5 (MQ=255)                                                                                                                                            ggATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatct                                                                                             >  1:354356‑M2/1‑20 (MQ=255)                                                                                                                                            ggATAGGCACGATCTGGGCTtatccaagatgttctcggcgatagtcgaaaactcaaaatct                                                                                             <  2:354356‑M2/61‑42 (MQ=255)                                                                                                                                            ggATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCt         <  7:319177/145‑1 (MQ=255)                                                                                                                                            ggATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGAt      <  5:228574/148‑1 (MQ=255)                                                                                                                                               tAagcccagatcatgcctatccaagatgttctcggcgatagtcgaaaactcaaaatctgaacgacctgagcgaagctcgtccacactagcaaaattgaccgtccaggcatgattgccgtccgactggatggcttgcgtccaagctgact  >  3:261177‑M1/1‑2 (MQ=255)                                                                                                                                               tAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATAACGTACGAGGCTTTGGACTACTCACGAAATTGTGACGCAGAGTCGGTCTTTAACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATaa    >  1:334125/1‑147 (MQ=255)                                                                                                                                                |                                                                                                                                                    TGCCGCTCCTTGAGTCAGCTTGGACGCAAGCCATCCAGTCGGACGGCAATCATGCCTGGACGGTCAATTTTGCTAGTGTGGACGAGCTTCGCTCAGGTCGTTCAGATTTTGAGTTTTCGACTATCGCCGAGAACATCTTGGATAGGCACGATCTGGGCTTATCCGAGTTCAAGGACTTCCAGCGTCACACGTTGATCACGTACGAGGCTTTGGACGACTCACGAAATTGTGACGCAGCGTCGGTCTTTCACGATCGCCTAGTGGACGCTCACACGAGGCGGTCTGATAAAA  >  NC_002947/4187000‑4187290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.