| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4255310 | 61 (1.010) | 3 (0.050) | 3/250 | NT | 5.1% | coding (818/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 4255385 | 55 (0.970) | coding (743/2253 nt) | PP_3728 | two‑component system sensor histidine kinase/response regulator | |||||
GCACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4255158‑4255310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtcgAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCATGAGCCATGAATTGCGTACGCCGCTCAACGGTATTCTGGGCATGGCCGAACTGCTGCGCGGCGG < NC_002947/4255385‑4255241 GCACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATG < 7:335683/149‑1GCACTTCGGTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACACGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATG < 4:202777/149‑1 CACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGG > 1:192142/1‑149 CACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGG > 4:17207/1‑149 CACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGG > 7:45156/1‑149 ACTTCGTTGAGAATCGCAAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGAGAACTCCAGGCGCCCGCCGCTCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCTTACGCAATTCATGGCTCATGGT < 5:332519/149‑1 AAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGGTCGAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGC > 5:346305/1‑149 CCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGGTCGAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCAT < 6:346305/149‑1 CGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGGTCGAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCATGAG < 1:780/149‑1 TGGTCGAGCGGCGTACGGCCAGCCTGGCTCGGGCCAGGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCATGAGCCATGAATTGCGTACGCCGCTCAACGGTATTCTGGGCATGGCCGAACTGCTGCGCGGC < 3:227990/149‑1 GTCGAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCATGAGCCATGAATTGCGTACGCCGCTCAACGGTATTCTGGGCATGGCCGAACTGCTGCGCGGCGG > 4:69455/1‑149 GCACTTCGTTGAGAATCGCCAACAGCCCCTCGCCGGCCTTGTACAAGGCCTCGACACGTTGGCGGTCGGCGACCTCCAGGCGCCCGCCGCGCAGCAGTTCGGCCATGCCCAGAATACCGTTGAGCGGCGTACGCAATTCATGGCTCATGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4255158‑4255310‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtcgAGCGGCGTACGGCCAGCCTGGCTCGGGCCAAGGACGAGGCCGAGGCTGCCAACCTGGCCAAGTCGCGCTTTTTGGCGACCATGAGCCATGAATTGCGTACGCCGCTCAACGGTATTCTGGGCATGGCCGAACTGCTGCGCGGCGG < NC_002947/4255385‑4255241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |