| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4957290 = | 75 (1.250) | 4 (0.070) | 4/258 | NT | 5.2% | coding (228/792 nt) | fliH | flagellar assembly protein FliH |
| ? | NC_002947 | 4957335 = | 72 (1.230) | coding (183/792 nt) | fliH | flagellar assembly protein FliH | |||||
CAAGCTTCGACCCGGAACCGGAGCCCGAACCGGAGCCTGAGCCTGAGCCCGAGGTCATCGAGGAAGTCGAGGAAGTGCCGCTGGAAGAAGTCCAGCCGTTGACCCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4957441‑4957290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACG > NC_002947/4957335‑4957481 CAAGCTTCGACCCGGAACCGGAGCCCGAACCGGAGCCTGAGCCTGAGCCCGAGGTCATCGAGGAAGTCGAGGAAGTGCCGCTGGAAGAAGTCCAGCCGTTGACCCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGC > 5:145580/1‑149 AGCTTCGACCCGGAACCGGAGCCCGAACCGGAGCCTGAGCCTGAGCCCGAGGTCATCGAGGAAGTCGAGGAAGTGCCGCTGGAAGAAGTCCAGCCGTTGACCCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTT < 7:227093/149‑1 CCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCG < 3:230391/144‑1 CCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCG > 4:230391/1‑144 CTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCG > 1:317753/1‑148 ACAACGAGGGCTTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGA < 2:317753/148‑1 TTCCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACGCATCCACGCCCTCGAGGTCGCGGGCAC > 6:25253/1‑149 CCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACG > 7:251669/1‑148 CCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCA < 5:369373/146‑1 CAAGCTTCGACCCGGAACCGGAGCCCGAACCGGAGCCTGAGCCTGAGCCCGAGGTCATCGAGGAAGTCGAGGAAGTGCCGCTGGAAGAAGTCCAGCCGTTGACCCTGGAAGAGCTCGAAGCCATCCGTCAGGAGGCTTACAACGAGGGCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4957441‑4957290‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcCAGGGTCAACGGCTGGACTTCTTCCAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCGAAGCTTGGCAGCGTCCACACATCCACGCCCTCGAGGTCGCGGGCACG > NC_002947/4957335‑4957481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |