New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4957290 =	75 (1.250)	4 (0.070)	4/258	NT	5.2%	coding (228/792 nt)	fliH	flagellar assembly protein FliH
	?	NC_002947	4957335 =	72 (1.230)					coding (183/792 nt)	fliH	flagellar assembly protein FliH

TCGATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCG  >  NC_002947/4957144‑4957434                                                                                                                                                    |                                                                                                                                                   tcGATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCg                                                                                                                                                    >  4:285418/1‑147 (MQ=255) cgtgcccgcgacctcgagggcgtggatgtgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgg                                                                                                                                                    >  7:251669‑M1/148‑148 (MQ=255)  gtgcccgcgacctcgagggcgtggatgcgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGaa                                                                                                                                                  >  6:25253‑M1/147‑149 (MQ=255)   tgcccgcgacctcgagggcgtggatgtgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgg                                                                                                                                                    <  5:369373‑M1/1‑1 (MQ=255)       tGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTc                                                                                                                                            >  2:135884/1‑149 (MQ=255)         cGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCg                                                                                                                                           <  2:102881/148‑1 (MQ=255)          gtgtCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGtt                                                                                                                                         <  8:194337/149‑1 (MQ=255)          gtgtCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGtt                                                                                                                                         <  8:199620/149‑1 (MQ=255)              tcgagggcgtggatgtgtggacgctgccaagcttcgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGt                                                                                                                                       <  2:317753‑M1/14‑1 (MQ=255)              ccTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTaa                                                                                                                                     >  3:285591/1‑149 (MQ=255)               cTGCTAGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTaa                                                                                                                                     <  5:28759/148‑1 (MQ=255)                tGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGc                                                                                                                                   >  5:130933/1‑149 (MQ=255)                  cTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGc                                                                                                                                   <  4:188200/147‑1 (MQ=255)                     ggCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCATGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcctcct                                                                                                                              <  1:287710/149‑1 (MQ=255)                     ggCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGcctcct                                                                                                                              >  5:38240/1‑149 (MQ=255)                            ggCTCCATCTGGTTGGCCATCAGGCGCTCGAGGCTGTCGATTTTGGTTTTCAGGGCGTCTTCGGCCTGCTGGCGAACCTT‑GAGATGGGTGCTGTGGAAGCCATCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGAt                                                                                                                       <  7:265499/149‑1 (MQ=255)                            ggCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGAt                                                                                                                       <  2:108773/149‑1 (MQ=255)                            ggCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGAt                                                                                                                       >  1:108773/1‑149 (MQ=255)                            ggCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGAt                                                                                                                       <  2:341541/149‑1 (MQ=255)                                  aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCATGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                 >  1:98698/1‑149 (MQ=255)                                  aTCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTc                                                                                                                 <  3:230673/149‑1 (MQ=255)                                     aGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGa                                                                                                               <  7:177226/148‑1 (MQ=255)                                       gTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGct                                                                                                            >  1:191748/1‑149 (MQ=255)                                             cATCAGCCGCTCGAGGCTGTCGGAATTGGTTTTAAGGGCCTATTCGGCCTACTGGCGAACCTT‑GAGCTGGGTGGTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGGGCTCttg                                                                                                        >  7:235084/1‑146 (MQ=255)                                              aTCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAg                                                                                                     >  3:33110/1‑149 (MQ=255)                                               tCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAgg                                                                                                    <  4:33110/149‑1 (MQ=255)                                                cgacccggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAg                                                                                                     >  1:317753‑M1/101‑148 (MQ=255)                                                 aGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCTAGCTCTTCCAggg                                                                                                   <  8:26136/148‑1 (MQ=255)                                                   ccGCGCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCa                                                                                                <  4:285591/149‑1 (MQ=255)                                                     gCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAAc                                                                                              <  2:130113/149‑1 (MQ=255)                                                     cggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAgg                                                                                                    >  4:230391‑M1/96‑144 (MQ=255)                                                     cggaaccggagcccgaaccggagcctgagcctgagcccgaggtcatcgaggaagtcgaggaagtgccgctggaagaagtccagccgttgaccctgGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAgg                                                                                                    <  3:230391‑M1/49‑1 (MQ=255)                                                         gAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACgg                                                                                            >  8:9101/1‑147 (MQ=255)                                                         gAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACgg                                                                                            <  7:9101/147‑1 (MQ=255)                                                          aGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTg                                                                                         <  5:199122/149‑1 (MQ=255)                                                            gCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGa                                                                                       >  4:214955/1‑149 (MQ=255)                                                             cTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGAc                                                                                      <  2:191748/149‑1 (MQ=255)                                                             cTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGAc                                                                                      >  2:77340/1‑149 (MQ=255)                                                              tGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACgg                                                                                            <  3:24884/142‑1 (MQ=255)                                                              tGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACgg                                                                                            >  4:24884/1‑142 (MQ=255)                                                                   aGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACttcttc                                                                                <  6:130933/149‑1 (MQ=255)                                                                    gTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACttcttc                                                                                >  8:135201/1‑148 (MQ=255)                                                                     tttGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGGTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACttcttc                                                                                >  1:259139/1‑147 (MQ=255)                                                                         gTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCgg                                                                        >  5:187609/1‑149 (MQ=255)                                                                               aGGGCCTCTTCGGCCTCCTGGCGAACCTTGGAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCactt                                                                   >  1:28120/1‑149 (MQ=255)                                                                               aGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttc                                                                  >  2:177860/1‑149 (MQ=255)                                                                                 ggCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcct                                                                >  8:83190/1‑149 (MQ=255)                                                                                  gCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctc                                                               <  2:28120/149‑1 (MQ=255)                                                                                  gCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctc                                                               <  3:219316/149‑1 (MQ=255)                                                                                  gCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTAGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctc                                                               <  2:35139/149‑1 (MQ=255)                                                                                       ttCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctcgactt                                                          >  1:369803/1‑149 (MQ=255)                                                                                           gCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctcgac                                                            >  4:131768/1‑143 (MQ=255)                                                                                           gCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCacttcctcgac                                                            <  3:131768/143‑1 (MQ=255)                                                                                                ctGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGAt                                                   <  2:369803/147‑1 (MQ=255)                                                                                                ctGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGa                                                 >  3:152918/1‑149 (MQ=255)                                                                                                ctGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGa                                                 >  3:261266/1‑149 (MQ=255)                                                                                                 tGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTc                                                                                                        >  8:102896/1‑95 (MQ=255)                                                                                                 tGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTc                                                                                                        <  7:102896/95‑1 (MQ=255)                                                                                                     gAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCg                                            >  1:299547/1‑149 (MQ=255)                                                                                                      aaCCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCgg                                           <  3:214955/149‑1 (MQ=255)                                                                                                         cTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑AAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggct                                        >  6:145580/1‑149 (MQ=255)                                                                                                             gAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctcag                                     >  1:26720/1‑149 (MQ=255)                                                                                                             gAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctca                                      <  7:83190/148‑1 (MQ=255)                                                                                                             gAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctca                                      <  4:152918/148‑1 (MQ=255)                                                                                                               gCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGggctcaggc                                   <  1:177860/149‑1 (MQ=255)                                                                                                                    gTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGctcaggctcagg                              <  6:38240/149‑1 (MQ=255)                                                                                                                       cTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTcaggctcaggct                            <  2:259139/148‑1 (MQ=255)                                                                                                                        tgtgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTcc                          >  1:145162/1‑149 (MQ=255)                                                                                                                          tgGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCgg                        >  7:261426/1‑149 (MQ=255)                                                                                                                           ggAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTCCACAGTAAAACTTCCTCGACTTCCTCGATGACCTCGGGCTCaggctcaggctcag                         >  1:307920/1‑147 (MQ=255)                                                                                                                            gAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGtt                      >  7:185166/1‑149 (MQ=255)                                                                                                                              aGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCg                    >  6:326403/1‑149 (MQ=255)                                                                                                                              aGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCg                    <  1:152607/149‑1 (MQ=255)                                                                                                                              aGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGACTCAGGCTCCGGTTCg                    <  2:145162/149‑1 (MQ=255)                                                                                                                              aGCCCGCGCGCTCACCGGTGTCGAATCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCg                    <  2:98698/149‑1 (MQ=255)                                                                                                                                 ccTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTACGGTTCGGGc                 >  5:96797/1‑149 (MQ=255)                                                                                                                                 ccTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGACCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCGCGGGCTCAGGCTCAGGCTCCGGTTCggg                  >  8:175996/1‑148 (MQ=255)                                                                                                                                  cTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCt                >  4:159577/1‑149 (MQ=255)                                                                                                                                  cTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCt                >  3:323079/1‑149 (MQ=255)                                                                                                                                     gcgcTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTcc              <  4:261266/148‑1 (MQ=255)                                                                                                                                      cgcTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACTGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCgg            <  6:182656/149‑1 (MQ=255)                                                                                                                                      cgcTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCgg            >  5:142120/1‑149 (MQ=255)                                                                                                                                       gcTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGt           <  4:323079/149‑1 (MQ=255)                                                                                                                                                  gCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCg  >  3:324516/1‑147 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCGATCTGCGTGTCCTGCTCGGCAATCGGCTCCATCAGGTTGGCCATCAGCCGCTCGAGGCTGTCGAGTTTGGTTTTCAGGGCCTCTTCGGCCTCCTGGCGAACCTT‑GAGCTGGGTGCTGTGGAAGCCCTCGCGCTCACCGGTTGCGAAGCCCTCGTTGTAAGCCTCCTGACGGATGGCTTCGAGCTCTTCCAGGGTCAACGGCTGGACTTCTTC‑‑CAGCGGCACTTCCTCGACTTCCTCGATGACCTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGTTCCGGGTCG  >  NC_002947/4957144‑4957434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.