| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4963771 = | 58 (0.960) | 5 (0.090) | 4/252 | NT | 9.9% | intergenic (‑117/+111) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ |
| ? | NC_002947 | 4963837 = | 36 (0.630) | intergenic (‑183/+45) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ | |||||
CGGCATGAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963924‑4963771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCG > NC_002947/4963837‑4963981 cgcCATGACCCGCCAGGGCGGGGAGGACCAGGCTGAGGATTGATGTTTGGGCGGCGTGCTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTATGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACG < 5:238287/145‑1CGGCATGAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACG < 5:370773/148‑1 TGAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAAC < 4:221084/149‑1 GAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGG < 5:153709/143‑1 GAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGG > 6:153709/1‑143 TTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCAT > 1:115072/1‑149 CGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCCCCGCCCTGGCGGCTCATGC > 6:235397/1‑149 GTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGC < 2:115072/149‑1 ACAAAACTCACGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCA < 5:235397/149‑1 AAACCTCACCGCGCACACCCCGCCCAACCGCAACCCCCACGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAA < 6:370773/149‑1 GCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACTGCGAATACGCAAACGTTCAGCCG > 4:272242/1‑149 GAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCG > 1:45928/1‑149 GAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGC > 3:11559/1‑126 GAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGC < 4:11559/126‑1 CGGCATGAGCCGCCAGGGCGGTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963924‑4963771‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCG > NC_002947/4963837‑4963981 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |