New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4963771 =	58 (0.960)	5 (0.090)	4/252	NT	9.9%	intergenic (‑117/+111)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ
	?	NC_002947	4963837 =	36 (0.630)					intergenic (‑183/+45)	fleS/fleQ	two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ

CCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCG  >  NC_002947/4963697‑4963981                                                                                                                                             |                                                                                                                                                 ccAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGcc                                                                                                                                           >  4:43241/1‑148 (MQ=255)       gtgtAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAcc                                                                                                                                                <  4:1350/137‑1 (MQ=255)       gtgtAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAcc                                                                                                                                                >  3:1350/1‑137 (MQ=255)          tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAAc                                                                                                                                 >  4:12206/1‑149 (MQ=255)          tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAAc                                                                                                                                 <  3:145756/149‑1 (MQ=255)            gCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCGGCCCAAACAAAAACCTCATGGCGAACACCCCGCCCAAACGCAAccc                                                                                                                               <  1:15518/149‑1 (MQ=255)             cAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGCGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAAcccc                                                                                                                              >  4:322185/1‑149 (MQ=255)               aTAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAAccccc                                                                                                                             >  7:106001/1‑148 (MQ=255)                tAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCaa                                                                                                                           <  3:45288/149‑1 (MQ=255)                tAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCATGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAAccccc                                                                                                                             >  3:10940/1‑147 (MQ=255)                  gCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAgg                                                                                                                         <  8:237847/149‑1 (MQ=255)                   ccGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGc                                                                                                                        >  1:93437/1‑149 (MQ=255)                   ccGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGc                                                                                                                        <  4:332145/149‑1 (MQ=255)                      tGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCTCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGaa                                                                                                                     <  7:110646/149‑1 (MQ=255)                            agaTGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCa                                                                                                               <  7:287896/149‑1 (MQ=255)                                       tgggtttgACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACAt                                                                                                     <  8:106001/148‑1 (MQ=255)                                         ggtttgACTTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCACGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCa                                                                                                   <  7:305482/148‑1 (MQ=255)                                                 gTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGc                                                                                          >  4:66968/1‑149 (MQ=255)                                                     gATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCACGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACGCGCAGCCCCAACATCACTCCTCCGGCTgg                                                                                      >  4:273322/1‑149 (MQ=255)                                                        tGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCTGAGATCGAGCGCCGCCCAAACAAAAACCTCAATGCGAACACCCCGCCCAAACGAAAACCCCAAGGAGAACACACATCCCAAACATCAATCATCCCCCTGGtac                                                                                   >  2:280892/1‑147 (MQ=255)                                                        tGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTc                                                                                    >  5:51696/1‑148 (MQ=255)                                                          cGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTc                                                                                 >  7:85170/1‑149 (MQ=255)                                                                      gaAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTggcg                                                                     <  8:85170/149‑1 (MQ=255)                                                                       aaGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTggcgg                                                                    <  3:43241/149‑1 (MQ=255)                                                                        aGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTggcggc                                                                   <  6:51696/149‑1 (MQ=255)                                                                           GTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCa                                                                <  4:221084‑M1/149‑1 (MQ=255)                                                                            ttcgccttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCAt                                                               >  1:115072‑M2/66‑149 (MQ=255)                                                                              cgccttgaggtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCCCCGCCCTGGCGGCTCATGc                                                             >  6:235397‑M2/64‑149 (MQ=255)                                                                                CCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTc                                                                 >  6:153709‑M1/1‑143 (MQ=255)                                                                                CCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTc                                                                 <  5:153709‑M1/143‑1 (MQ=255)                                                                                 CGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCATACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAGCACGCCGCCCAAACATCAATCCTCAGCCTGGTCCTCCCCGCCCTGGCGGGTcatggcg                                                           <  5:238287‑M1/148‑4 (MQ=255)                                                                                 CGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCg                                                           <  5:370773‑M1/148‑1 (MQ=255)                                                                                  atctgTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTa                                                         <  7:226855/145‑1 (MQ=255)                                                                                      gTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAACCCTCAAGGCGAGCCCCCCGCCCAAACGCCACCCCCAAGGCGAACCCCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTg                                                     >  6:374515/1‑149 (MQ=255)                                                                                       ttttGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTa                                                         >  8:226855/1‑144 (MQ=255)                                                                                       ttttGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTgc                                                    >  2:211389/1‑149 (MQ=255)                                                                                       gtttttgtttgggcggcgctcgatctccgcggcacaacaaaactcacggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTgc                                                    <  2:115072‑M2/95‑1 (MQ=255)                                                                                               tgCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTtc                                            <  3:66968/149‑1 (MQ=255)                                                                                                   gcgGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGAAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGa                                        <  1:280892/149‑1 (MQ=255)                                                                                                                gccgccCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACg                           >  4:279605/1‑149 (MQ=255)                                                                                                                    cccAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCCACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCg                        >  4:2625/1‑148 (MQ=255)                                                                                                                     ccAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGaa                      <  3:322185/149‑1 (MQ=255)                                                                                                                     ccAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGaa                      <  1:211389/149‑1 (MQ=255)                                                                                                                     ccAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGaa                      <  2:93437/149‑1 (MQ=255)                                                                                                                      caaacaaaAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACAACAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGaa                      >  7:233029/1‑148 (MQ=255)                                                                                                                           acaaaactcacggcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCa                <  5:235397‑M2/131‑1 (MQ=255)                                                                                                                             aaacctcaccgcgcacACCCCGCCCAACCGCAACCCCCACGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCaaa              <  6:370773‑M2/133‑1 (MQ=255)                                                                                                                               aCCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACg            <  3:221084/149‑1 (MQ=255)                                                                                                                                 cTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGtt          <  1:292188/149‑1 (MQ=255)                                                                                                                                 cTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGtt          <  4:10940/149‑1 (MQ=255)                                                                                                                                  tCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGtt          >  2:15874/1‑148 (MQ=255)                                                                                                                                       gcgaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACTGCGAATACGCAAACGTTCAGCcg    >  4:272242‑M2/7‑149 (MQ=255)                                                                                                                                         gaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGc                         <  4:11559‑M2/122‑1 (MQ=255)                                                                                                                                         gaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGc                         >  3:11559‑M2/5‑126 (MQ=255)                                                                                                                                         gaacACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCcgcg  >  1:45928‑M2/5‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                 CCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACACCCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCG  >  NC_002947/4963697‑4963981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.