New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5693247	71 (1.180)	4 (0.070)	3/262	NT	5.2%	coding (547/570 nt)	PP_4995	exopolysaccharide biosynthesis protein
	?	NC_002947	= 5693277	75 (1.270)					coding (8/426 nt)	PP_4996	Holliday junction resolvase

GCGGAACTGGCCGACAACGCCTGGCTGAACTGCCCGTTCGACCCGGAAATCGTCTTCGGCATGGCCAGCGACCTGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5693124‑5693247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaTCAGCCATCAGGCGTGGCCCGCCTGGCTGGTCAGCAGGTGCAGGTTGATCCCCAGGCTGGCGGCCGCAGCCTCAAGGCGCAGGTCGCTGGCCATGCCGAAGACGATTTCCGGGTCGAACGGGCAGTTCAGCCAGGCGTTGTCGGCCA  <  NC_002947/5693277‑5693131                                                                                                                                                                                                                                                                                 GCGGAACTGGCCGACAACGCCTGGCTGAACTGCCCGTTCGACCCGGAAATCGTCTTCGGCATGGCCAGCGACCTGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGACCAGC‑‑‑CAGGCGTGGCCCGCCTGGCT                                                                                                                         <  7:75518/149‑1             GACAACGCCTGGCTGAACTGCCCGTTCGACCCGGAAATCGTCTTCGGCATGGCCAGCGACCTGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGATCAGCCATCAGGCGTGGCCCGCCTGGCTGGTCAGCAG                                                                                                                <  2:171710/149‑1                                                                          TGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGATCAGCCATCAGGCGTGGCCCGCCTGGCTG                                                                                                                        >  3:288330/1‑80                                                                          TGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGATCAGCCATCAGGCGTGGCCCGCCTGGCTG                                                                                                                        <  4:288330/80‑1                                                                                                                           GATCAGCCATCAGGCGTGGCCCGCCTGGCTGGTCAGCAGGTGCAGGTTGATCCCCAGGCTGGCGGCCGCAGCCTCAAGGCGCAGGTCGCTGGCCATGCCGAAGACGATTTCCGGGTCGAACGGGCAGTTCAGCCAGGCGTTGTCGGCCA  <  5:81285/149‑1                                                                                                                           GATCAGCCATCAGGCGTGGCCCGCCTGGCTGGTCAGCAGGTGCAGGTTGATCCCCAGGCTGGCGGCCGCAGCCTCAAGGCGCAGGTCGCTGGCCATGCCGAAGACGATTTCCGGGTCGAACGGGCAGTTCAGCCAGGCGTTGTCGGC    >  6:2205/1‑147                                                                                                                                                                                                                                                                                 GCGGAACTGGCCGACAACGCCTGGCTGAACTGCCCGTTCGACCCGGAAATCGTCTTCGGCATGGCCAGCGACCTGCGCCTTGAGGCTGCGGCCGCCAGCCTGGGGATCAACCTGCACCTGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5693124‑5693247 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaTCAGCCATCAGGCGTGGCCCGCCTGGCTGGTCAGCAGGTGCAGGTTGATCCCCAGGCTGGCGGCCGCAGCCTCAAGGCGCAGGTCGCTGGCCATGCCGAAGACGATTTCCGGGTCGAACGGGCAGTTCAGCCAGGCGTTGTCGGCCA  <  NC_002947/5693277‑5693131

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.