New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5780398 =	66 (1.100)	4 (0.070)	3/256	NT	6.0%	coding (702/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP
	?	NC_002947	5780439 =	62 (1.070)					coding (743/1794 nt)	cvrA	K(+)/H(+) antiporter NhaP

GCAGGATGCCATGGCGGCTGCGGATAGGCTTGTTGCCAAGCACCAGGCCGCACAGGTAAACGGCGAGGAAGCCGCTACCATGCAGGGCGTTGGTCAGCGAGAACATTACCAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5780549‑5780398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCCAGATCGG  >  NC_002947/5780439‑5780586                                                                                                                                                                                                                                                                                                              GCAGGATGCCATGGCGGCTGCGGATAGGCTTGTTGCCAAGCACCAGGCCGCACAGGTAAACGGCGAGGAAGCCGCTACCATGCAGGGCGTTGGTCAGCGAGAACATTACCAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCG                                                                                                                                                         >  6:148409/1‑149  CAGGATGCCATGGCGGCTGCGGATAGGCTTGTTGGCAAGCACCAGGCCGGACAGGTAAACGGCGAGGAAGCCGCTACCATGCAGGGCGTTGGTCAGCGAGAACATTACCAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGG                                                                                                                                                        <  6:339392/149‑1   AGGATGCCATGGCGGCTGCGGATAGGCTTGTTGCCAAGCACCAGGCCGCACAGGTAAACGGCGAGGAAGCCGCTACCATGCAGGGCGTTGGTCAGCGAGAACATTACCAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGC                                                                                                                                                       >  6:351101/1‑149                                                                                                              CAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCAT                                            >  2:273182/1‑149                                                                                                              CAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTG                                                                           <  7:129853/118‑1                                                                                                              CAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTG                                                                           >  8:129853/1‑118                                                                                                                GGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCC                                          >  3:159005/1‑149                                                                                                                                                 CGCCGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCC         <  4:159005/149‑1                                                                                                                                                    CGGCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCCAGA      <  6:223512/149‑1                                                                                                                                                      GCCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCC          >  5:155194/1‑143                                                                                                                                                       CCTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCCAGATCG   <  6:358420/149‑1                                                                                                                                                        CTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCCAGATCGG  >  8:59035/1‑149                                                                                                                                                                                                                                                                                                              GCAGGATGCCATGGCGGCTGCGGATAGGCTTGTTGCCAAGCACCAGGCCGCACAGGTAAACGGCGAGGAAGCCGCTACCATGCAGGGCGTTGGTCAGCGAGAACATTACCAGGCCGCCGGCCACTACCAGAATGGGGTACAGGCCGCCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5780549‑5780398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTGGTAATGTTCTCGCTGACCAACGCCCTGCATGGTAGCGGCTTCCTCGCCGTTTACCTGTGCGGCCTGGTGCTTGGCAACAAGCCTATCCGCAGCCGCCATGGCATCCTGCACATGCTCGACGGCATGGCCTGGCTGGCCCAGATCGG  >  NC_002947/5780439‑5780586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.