New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5789571	72 (1.200)	6 (0.110)	5/248	NT	7.7%	coding (728/1278 nt)	ynfM	efflux transporter
	?	NC_002947	= 5789591	76 (1.360)					coding (748/1278 nt)	ynfM	efflux transporter

CTTCGTCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5789416‑5789571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaggaACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG  <  NC_002947/5789591‑5789445                                                                                                                                                                                                                                                                                                                 CTTCGTCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCATGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACT                                                                                                                                                            <  6:44852/149‑1    CGTCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTT                                                                                                                                                           <  2:330440/147‑1     GTCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTC                                                                                                                                                          >  7:37014/1‑147                      GATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGG                                                                                                                                       >  5:322460/1‑149                                        CCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGC                                                                                                                     <  6:322460/149‑1                                              CCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGAC                                                                                                                >  2:287091/1‑148                                              CCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGT                                                                                                                       <  5:363282/141‑1                                              CCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGT                                                                                                                       >  6:363282/1‑141                                                  GTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAA                                                                                                             <  1:287091/147‑1                                                                                                                                                     TTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGC        >  3:114094/1‑149                                                                                                                                                     TTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGC        >  5:15808/1‑149                                                                                                                                                     TTCAAGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGC        >  8:217403/1‑149                                                                                                                                                         AGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAAT    >  1:20832/1‑149                                                                                                                                                         AGGAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGCAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAAT    <  1:98513/149‑1                                                                                                                                                           GAACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG  >  8:17682/1‑149                                                                                                                                                                                                                                                                                                                 CTTCGTCAGCTGGCACACGGCGATGCTGACCATTGGCGGCCTGGCCCTGGTGGCCGCGCTGGTATTCTGGAAGGTGCTGCCGGAGTCACGCAATTTCCGCGCACAGACGATGAACCCACGCAGCCTGCTGGACGGCTTTGTCATGCACTTCAAGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5789416‑5789571 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcaaggaACAGCCAGGGCAGGCCGGCGTCCTTGAAGTGCATGACAAAGCCGTCCAGCAGGCTGCGTGGGTTCATCGTCTGTGCGCGGAAATTGCGTGACTCCGGCAGCACCTTCCAGAATACCAGCGCGGCCACCAGGGCCAGGCCGCCAATGG  <  NC_002947/5789591‑5789445

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.