New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5805040 =	59 (0.980)	3 (0.050)	3/250	NT	5.7%	coding (169/882 nt)	PP_5083	type IV pili biogenesis protein PilM
	?	NC_002947	5805077 =	44 (0.780)					coding (132/882 nt)	PP_5083	type IV pili biogenesis protein PilM

CGGCAAGGATGCCGGTTCACTCGTGGGGGTGGAAATTACGCCCGACGCCGTTCGGATCATGCAACTGCAGCAGCGCAATCGACGCTGCCGTGTGATGGGGTCGGCACAAGAGCTGTTTCAGGCGCCGCTGGCCGATGACTGGGCTCAGGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5805194‑5805040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctgAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAAGCGTCCAAACATCGCGACTCCTTTGCTG  >  NC_002947/5805077‑5805224                                                                                                                                                                                                                                                                                                                 CGGCAAGGATGCCGGTTCACTCGTGGGGGTGGAAATTACGCCCGACGCCGTTCGGATCATGCAACTGCAGCAGCGCAATCGACGCTGCCGTGTGATGGGGTCGGCACAAGAGCTGTTTCAGGCGCCGCTGGCCGATGACTGGGCTCAG                                                                                                                                                             <  6:376726/148‑1                                                                                                                   GTTTCAGGCGCCGCTGGCCGATGACTGGGCTCAGGCGCCTGAAACAGCTCTTGTGCCGCCCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGC                                          >  8:280363/1‑149                                                                                                                         GGCGCCGCTGGCCGATGACTGGGCTCAGGCGCCTGAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAA                                                                   >  1:142039/1‑118                                                                                                                         GGCGCCGCTGGCCGATGACTGGGCTCAGGCGCCTGAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAA                                                                   <  2:142039/118‑1                                                                                                                                                      CGCCTGAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAAGCGTCCAAACATCGCGACTCCTT       >  6:231954/1‑149                                                                                                                                                        CCTGAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAAGCGTCCAAACATCGCGACTCCTTTG     >  4:90604/1‑149                                                                                                                                                          TGAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAAGCGTCCAAACATCGCGACTCCTTTGCT   >  5:135467/1‑149                                                                                                                                                           GAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAACCGTCCAAACATCGCGACTCCTTTGCTG  >  1:215480/1‑149                                                                                                                                                                                                                                                                                                                 CGGCAAGGATGCCGGTTCACTCGTGGGGGTGGAAATTACGCCCGACGCCGTTCGGATCATGCAACTGCAGCAGCGCAATCGACGCTGCCGTGTGATGGGGTCGGCACAAGAGCTGTTTCAGGCGCCGCTGGCCGATGACTGGGCTCAGGCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5805194‑5805040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgcctgAAACAGCTCTTGTGCCGACCCCATCACACGGCAGCGTCGATTGCGCTGCTGCAGTTGCATGATCCGAACGGCGTCGGGCGTAATTTCCACCCCCACGAGTGAACCGGCATCCTTGCCGAAGCGTCCAAACATCGCGACTCCTTTGCTG  >  NC_002947/5805077‑5805224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.