New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 613309	43 (0.710)	3 (0.050)	3/256	NT	6.5%	coding (873/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase
	?	NC_002947	= 613380	45 (0.780)					coding (802/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase

CGGCCATGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGC  >  NC_002947/613161‑613457                                                                                                                                                      |                                                                                                                                                     cggcCATGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCC                                                                                                                                                      >  4:294969‑M1/1‑149 (MQ=255)     cATGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCcttct                                                                                                                                                  >  6:46816/1‑149 (MQ=255)      aTGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCcttctt                                                                                                                                                 <  7:5599/149‑1 (MQ=255)       tGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTg                                                                                                                                                <  3:266114/149‑1 (MQ=255)         tCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCcttct                                                                                                                                                  <  1:160722/145‑1 (MQ=255)         tCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCcttct                                                                                                                                                  >  2:160722/1‑145 (MQ=255)          cGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTc                                                                                                                                             <  8:54547/149‑1 (MQ=255)                  cACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGCATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACAt                                                                                                                                      <  1:97333/149‑1 (MQ=255)                                  cgGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCg                                                                                                                          >  8:99527/1‑144 (MQ=255)                                  cgGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCg                                                                                                                          <  7:99527/144‑1 (MQ=255)                                     aGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTc                                                                                                                  <  2:14336/149‑1 (MQ=255)                                         tttCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCaccatgatcgccaccctgcgcaacatgcgtgacctgaaag                                                                                                              >  7:244353‑M1/1‑109 (MQ=255)                                         tttCGGGCCGCTGGCTATCTTCGCCGCGGCGGCCTTGTCGGCCGGCTCCAGCTTAGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCCAAGCCTTTGCACATCTTGGTCACCACATGCAGGAACTGCGCGCCTTTCAGGt                                                                                                              >  8:338437/1‑149 (MQ=255)                                                ccGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCAt                                                                                                       >  8:151402/1‑149 (MQ=255)                                                     ggCTTTCTTCGGCGCGGCGGGCTTGTCGGCGGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTgc                                                                                                  >  1:30684/1‑149 (MQ=255)                                                        tttCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTcaccac                                                                                                                                        >  6:74027/1‑108 (MQ=255)                                                        tttCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTcaccac                                                                                                                                        <  5:74027/108‑1 (MQ=255)                                                           cttcGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAgg                                                                                             <  1:229447/148‑1 (MQ=255)                                                            ttcGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGt                                                                                           >  4:288616/1‑149 (MQ=255)                                                               ggcgcggcgGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTgg                                                                                         <  8:90364/148‑1 (MQ=255)                                                                gcgcggcgGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGc                                                                                        >  1:57311/1‑148 (MQ=255)                                                                  gcggcgGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGAt                                                                                     >  6:226913/1‑149 (MQ=255)                                                                  gcggcgGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGAt                                                                                     <  8:20944/149‑1 (MQ=255)                                                                    ggcggGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCa                                                                                   <  7:151402/149‑1 (MQ=255)                                                                        ggCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCAtggt                                                                               <  3:294969/149‑1 (MQ=255)                                                                        ggCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCAtggt                                                                               <  5:46816/149‑1 (MQ=255)                                                                           ttGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTggg                                                                            <  6:49815‑M2/149‑4 (MQ=255)                                                                              tCGGGCGGCTCCAGCTTGGTGATGGCGGGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAg                                                                         <  8:185294/149‑1 (MQ=255)                                                                                  ccggcTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCaccatgatcgccaccctgcgcaacatgcgtgacctgaaaggcccgcagttcctgcatgtggtgaccaagaagggcaaaggc                                                                     <  8:244353‑M1/149‑82 (MQ=255)                                                                                   cggcTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGt                                                                    <  5:42594/149‑1 (MQ=255)                                                                                    ggcTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGGCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTg                                                                   <  6:45700/149‑1 (MQ=255)                                                                                       tCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGCCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGcc                                                                >  2:206731/1‑149 (MQ=255)                                                                                         cAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCaccatgatcgccaccctgcgcaacatgcgtgacctgaaaggcccgcagttcctgcatgtggtgaccaagaagggcaaaggcttcgccc                                                              <  6:209064‑M1/149‑89 (MQ=255)                                                                                                   aTGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTCGCCGTCGATCGGGc                                                     <  7:318392/148‑1 (MQ=255)                                                                                                      gCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGAt                                                 <  2:57311/149‑1 (MQ=255)                                                                                                            tAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGtt                                           >  6:172641/1‑149 (MQ=255)                                                                                                             aGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTc                                          >  3:328506/1‑149 (MQ=255)                                                                                                               ccG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTcca                                        <  5:172641/149‑1 (MQ=255)                                                                                                                cG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccag                                       >  4:90753/1‑149 (MQ=255)                                                                                                                 g‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagc                                      >  4:103680/1‑149 (MQ=255)                                                                                                                 g‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagc                                      >  5:242579/1‑149 (MQ=255)                                                                                                                       ggTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTCCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagctcagc                                 >  5:47520/1‑149 (MQ=255)                                                                                                                        gTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTg                                                                                                   >  6:35431/1‑82 (MQ=255)                                                                                                                            aTCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTc                            <  4:328506/149‑1 (MQ=255)                                                                                                                                  gCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAg                      >  7:272371/1‑149 (MQ=255)                                                                                                                                     ggggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGt                   <  2:30684/149‑1 (MQ=255)                                                                                                                                      gggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTgggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctg                  <  6:209064‑M2/149‑62 (MQ=255)                                                                                                                                       ggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGc                 <  3:288616/149‑1 (MQ=255)                                                                                                                                        gCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGcc                >  7:47294/1‑149 (MQ=255)                                                                                                                                          gAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTg              <  5:49815/149‑1 (MQ=255)                                                                                                                                           aaGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTgg             <  6:242579/149‑1 (MQ=255)                                                                                                                                             gCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTgggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctggagccgg           <  8:244353‑M2/149‑69 (MQ=255)                                                                                                                                                tttGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGctct                              <  6:200680/127‑1 (MQ=255)                                                                                                                                                tttGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGctct                              >  5:200680/1‑127 (MQ=255)                                                                                                                                                    cccaccatgatcgccaccctgcgcaacatgcgtgacctgaaaggcccgcagttcctgcatgtggtgaccaagaagggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctggagccggccgacaa    <  6:49815‑M1/149‑147 (MQ=255)                                                                                                                                                      cttcttGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGc  >  5:211646/1‑149 (MQ=255)                                                                                                                                                      cttcttGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGCCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGc  <  1:206731/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     CGGCCATGTCGCACAGCCACTGGCCGAACACCGCGGAGTATTTCGGGCCGCTGGCTTTCTTCGGCGCGGCGGGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCG‑ATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGC  >  NC_002947/613161‑613457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.