New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 613309	43 (0.710)	3 (0.050)	3/256	NT	6.5%	coding (873/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase
	?	NC_002947	= 613380	45 (0.780)					coding (802/1896 nt)	dxs	1‑deoxyxylulose‑5‑phosphate synthase

GGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGACAGCACTTTCTTGCT  >  NC_002947/613232‑613527                                                                                                                                                     |                                                                                                                                                    ggCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCAtggt                                                                                                                                                     <  5:46816/149‑1 (MQ=255) ggCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCAtggt                                                                                                                                                     <  3:294969/149‑1 (MQ=255)    ttGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTggg                                                                                                                                                  <  6:49815‑M2/149‑4 (MQ=255)       tCGGGCGGCTCCAGCTTGGTGATGGCGGGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAg                                                                                                                                               <  8:185294/149‑1 (MQ=255)            cggcTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGt                                                                                                                                          <  5:42594/149‑1 (MQ=255)             ggcTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGGCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTg                                                                                                                                         <  6:45700/149‑1 (MQ=255)                tCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGCCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGcc                                                                                                                                      >  2:206731/1‑149 (MQ=255)                            aTGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTCGCCGTCGATCGGGc                                                                                                                           <  7:318392/148‑1 (MQ=255)                               gCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGAt                                                                                                                       <  2:57311/149‑1 (MQ=255)                                     tAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGtt                                                                                                                 >  6:172641/1‑149 (MQ=255)                                      aGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTc                                                                                                                >  3:328506/1‑149 (MQ=255)                                        ccGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTcca                                                                                                              <  5:172641/149‑1 (MQ=255)                                         cGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccag                                                                                                             >  4:90753/1‑149 (MQ=255)                                          gATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagc                                                                                                            >  5:242579/1‑149 (MQ=255)                                          gATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagc                                                                                                            >  4:103680/1‑149 (MQ=255)                                               ggTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTCCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTccagctcagc                                                                                                       >  5:47520/1‑149 (MQ=255)                                                    aTCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTc                                                                                                  <  4:328506/149‑1 (MQ=255)                                                          gCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAg                                                                                            >  7:272371/1‑149 (MQ=255)                                                             ggggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGt                                                                                         <  2:30684/149‑1 (MQ=255)                                                              gggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTgggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctg                                                                                        <  6:209064‑M2/149‑62 (MQ=255)                                                               ggCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGc                                                                                       <  3:288616/149‑1 (MQ=255)                                                                gCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGcc                                                                                      >  7:47294/1‑149 (MQ=255)                                                                  gAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTg                                                                                    <  5:49815/149‑1 (MQ=255)                                                                   aaGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTgg                                                                                   <  6:242579/149‑1 (MQ=255)                                                                     gCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTgggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctggagccgg                                                                                 <  8:244353‑M2/149‑69 (MQ=255)                                                                        tttGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGctct                                                                                                    <  6:200680/127‑1 (MQ=255)                                                                        tttGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGctct                                                                                                    >  5:200680/1‑127 (MQ=255)                                                                              cttcttGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGc                                                                        >  5:211646/1‑149 (MQ=255)                                                                              cttcttGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGCCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGc                                                                        <  1:206731/149‑1 (MQ=255)                                                                                     gTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTg                                                                   <  6:136420/147‑1 (MQ=255)                                                                                     gTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTg                                                                   >  5:136420/1‑147 (MQ=255)                                                                                     gTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCCGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGc                                                                 >  4:211352/1‑149 (MQ=255)                                                                                     gTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCCGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGc                                                                 <  3:211352/149‑1 (MQ=255)                                                                                           acaTGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTc                                                           <  7:338437/149‑1 (MQ=255)                                                                                             aTGCAGGAACTGCGGGCCTTTCAGGTCACGGATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGAGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCt                                                         >  7:351084/1‑149 (MQ=255)                                                                                              tGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTc                                                        <  5:226913/149‑1 (MQ=255)                                                                                                        gCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACgg                                              >  3:285831/1‑149 (MQ=255)                                                                                                          gggCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACggg                                             >  4:148515/1‑148 (MQ=255)                                                                                                          gggCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACggg                                             >  2:239443/1‑148 (MQ=255)                                                                                                          gggCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGc                                            <  8:47294/149‑1 (MQ=255)                                                                                                           ggCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCa                                                                              >  6:376187/1‑114 (MQ=255)                                                                                                              cTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTgggcaaaggcttcgcccctgccgagattgacccgatcggctaccacgccatcaccaagctggagccggccgacaagcccgccgcgccgaagaaagccagcggcccgaaa                                        >  7:244353‑M2/1‑40 (MQ=255)                                                                                                                 tCAGGGCTCGCATGTTGCGCAGGGTGGCGTTCATGGAGGGCAGGGCGTTGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGAGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTc                                      <  8:351084/148‑1 (MQ=255)                                                                                                                   aGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGc                                                                                           <  7:21287/93‑1 (MQ=255)                                                                                                                   aGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGc                                                                                           >  8:21287/1‑93 (MQ=255)                                                                                                                     gTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAgg                                 >  6:251509/1‑149 (MQ=255)                                                                                                                      tCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGgc                                <  3:148515/149‑1 (MQ=255)                                                                                                                        aCGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGgcgc                              >  3:8978/1‑149 (MQ=255)                                                                                                                          gCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCt                            >  7:289201/1‑149 (MQ=255)                                                                                                                             tGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTgg                          >  1:68107/1‑148 (MQ=255)                                                                                                                                     atggTGGCTATCATGGTGGGCAGGTCGTGTCCGTCGATCGGGCCGATGTAGTTCCAGCTCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCGCTTGGCTTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGa                 <  6:47520/147‑1 (MQ=255)                                                                                                                                     aGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGa                 <  6:211646/149‑1 (MQ=255)                                                                                                                                                    gtggGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGACAGCACTTTCTtgct  <  3:103680/149‑1 (MQ=255)                                                                                                                                                    gtggGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGACAGCACTTTCTtgct  <  1:239443/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GGCTTGTCGGCCGGCTCCAGCTTGGTGATGGCGTGGTAGCCGATCGGGTCAATCTCGGCAGGGGCGAAGCCTTTGCCCTTCTTGGTCACCACATGCAGGAACTGCGGGCCTTTCAGGTCACGCATGTTGCGCAGGGTGGCGATCATGGTGGGCAGGTCGTGGCCGTCGATCGGGCCGATGTAGTTCCAGCCCAGCTCTTCGAACAGCGTGCCTGGCACCAGCATGCCCTTGGCGTATTCCTCGGTGCGACGGGCAATTTCCCAGGCGCCTGGCAACCGCGACAGCACTTTCTTGCT  >  NC_002947/613232‑613527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.