| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1170744 = | 41 (0.680) | 6 (0.110) | 6/244 | NT | 13.7% | intergenic (‑335/+98) | leuA/PP_1026 | 2‑isopropylmalate synthase/M23/M37 family peptidase |
| ? | NC_002947 | 1170828 = | 38 (0.690) | intergenic (‑419/+14) | leuA/PP_1026 | 2‑isopropylmalate synthase/M23/M37 family peptidase | |||||
AAGCGTTCGGGAAAAATTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCAT > NC_002947/1170598‑1170888 | aaGCGTTCGGGAAAAATTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCtt > 2:252636/1‑149 (MQ=255) aGCGTTCGGGAAAAATTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTc < 5:373949/149‑1 (MQ=255) gCGTTCGGGAAAAATTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGAGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTcg > 7:160206/1‑149 (MQ=255) cgtcgtggcgaggtggtcgggcgcgtgggctcgaccgggcgggcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTcgc < 6:193147‑M1/6‑1 (MQ=255) gtcgtggcgaggtggtcgggcgcgtgggctcgaccgggcgggcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTcgcg < 7:219937‑M1/7‑1 (MQ=255) gtcctggcgatgtcgtcgggcgcgagtgctcgaccggtcgtgcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattatcattggcgcgttccagccctgaaactgcggcgcctgCTTcgcg > 8:291299‑M1/143‑149 (MQ=255) cgtggcgaggtggtcgggcgcgtgggctcgaccgggcgggcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCggg > 5:229045‑M1/141‑149 (MQ=255) gggAAAAATTGAGAGGAATGCTTTAAAAAAGCAATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACAAAGTTGAACTGCTTTCAACTTTGATGGCATCTTAGCgggaa > 7:56082/1‑147 (MQ=255) aaaaTTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGcc < 4:257641/149‑1 (MQ=255) aaaaTTGAGACGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGcc < 5:360264/149‑1 (MQ=255) ttGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCt > 4:261336/1‑149 (MQ=255) gtcgggcgcgtgggctcgaccgggcgggcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGcc > 6:206931‑M1/129‑143 (MQ=255) gtcgggcgcgtgggctcgaccgggcgggcaaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGcc < 5:206931‑M1/15‑1 (MQ=255) agagGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTcc < 7:221233/148‑1 (MQ=255) gAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACaa < 5:57707/149‑1 (MQ=255) aaTGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGTCGCTTTTTGATGTTTGCGCAGTATTTTTGGATGGCGCAACACTGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACaa < 4:370228/148‑1 (MQ=255) gCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTAt > 4:265399/1‑149 (MQ=255) ttAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTg > 5:104548/1‑147 (MQ=255) aGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAg < 3:265399/148‑1 (MQ=255) cGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGcgaagag > 3:160574/1‑117 (MQ=255) cGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGcgaagag < 4:160574/123‑7 (MQ=255) aaccgggccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCACGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCtt < 3:162465‑M1/50‑1 (MQ=255) gagaTTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTa > 4:224916/1‑127 (MQ=255) gagaTTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTa < 3:224916/127‑1 (MQ=255) gccgcacatgcactggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCACGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGt > 4:162465‑M1/94‑149 (MQ=255) ttATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATATTTGGATGGCGCAACACAGTTGAACTTCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGt < 5:99182/148‑1 (MQ=255) aTGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTAc < 3:261336/148‑1 (MQ=255) cTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCtgtg < 5:183985/149‑1 (MQ=255) actggaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAg < 2:345957‑M1/67‑1 (MQ=255) gaacgtcagcctgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCgg > 1:345957‑M1/79‑148 (MQ=255) gCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATCGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGc < 8:167348/149‑1 (MQ=255) gcgcTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGa > 7:119035/1‑116 (MQ=255) gcgcTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGa < 8:119035/116‑1 (MQ=255) cTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCcgc < 6:104548/149‑1 (MQ=255) cTTATTGAAGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGGGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGGGCTGTGTCTGAAGCCTTCGCTGTACCTGTGGGAGCGGGCGTGCCcgc < 5:170706/149‑1 (MQ=255) tgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGt > 7:216513‑M1/68‑141 (MQ=255) tgaacgatgcgcgggtggacccggcgattttcattggcgcgttccagccctgaaactgcggcgcctgCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGt < 8:216513‑M1/74‑1 (MQ=255) ttGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGaa < 1:252636/148‑1 (MQ=255) ttGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAg > 7:76393/1‑149 (MQ=255) gTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCtgt > 4:42088/1‑98 (MQ=255) gTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCtgt < 3:42088/98‑1 (MQ=255) cAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGc > 4:349455/1‑125 (MQ=255) cAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGc < 3:349455/125‑1 (MQ=255) gATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCgg > 7:87765/1‑50 (MQ=255) gATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCgg < 8:87765/50‑1 (MQ=255) gATGGCGCAACAAAGTTGAACTGCTGTCGACTGTGCTGGCCTCTGCGCGGGAATGCCCGCTCCCACACGTATTGTGCGGTGTCGTAAGGCTTCGCTGTACCTGTGGGAGGGGGGGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCt < 2:29276/148‑1 (MQ=255) acaGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGAGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCaa > 7:108078/1‑149 (MQ=255) ttGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGaa < 5:68452/149‑1 (MQ=255) aaCTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAAt > 4:140173/1‑149 (MQ=255) aCTGCTGGCGACTGTGCTGGCCTCTTCGGGGGCATCCCCGCTCCCACATGTATTGTGCTGTGTCTGAAGGCTGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATc < 8:76393/149‑1 (MQ=38) tgctgTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGc > 5:70789/1‑149 (MQ=255) ctgTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCg > 4:75067/1‑149 (MQ=255) aCTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCa > 8:219937/1‑149 (MQ=255) gCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCAcc > 5:346634/1‑146 (MQ=255) gCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCAcc < 6:346634/146‑1 (MQ=255) cTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCcgcg > 4:308552/1‑149 (MQ=255) gCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCAt > 5:193147/1‑149 (MQ=255) | AAGCGTTCGGGAAAAATTGAGAGGAATGCTTAAAAAAAGCCATTAGGCGAGATTTTATGGCTTGGATCTGCTAGGCGCTTATTGATGTTTGCGCAGTATTTTTCGATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCAT > NC_002947/1170598‑1170888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |