New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1170744 =	41 (0.680)	6 (0.110)	6/244	NT	13.7%	intergenic (‑335/+98)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase
	?	NC_002947	1170828 =	38 (0.690)					intergenic (‑419/+14)	leuA/PP_1026	2‑isopropylmalate synthase/M23/M37 family peptidase

GATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCACGACGCAGTTG  >  NC_002947/1170702‑1170976                                                                                                                                |                                                                                                                                                     gATGGCGCAACAAAGTTGAACTGCTGTCGACTGTGCTGGCCTCTGCGCGGGAATGCCCGCTCCCACACGTATTGTGCGGTGTCGTAAGGCTTCGCTGTACCTGTGGGAGGGGGGGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCt                                                                                                                                 <  2:29276/148‑1 (MQ=255)            acaGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGAGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCaa                                                                                                                     >  7:108078/1‑149 (MQ=255)                ttGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGaa                                                                                                                 <  5:68452/149‑1 (MQ=255)                   aaCTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAAt                                                                                                              >  4:140173/1‑149 (MQ=255)                    aCTGCTGGCGACTGTGCTGGCCTCTTCGGGGGCATCCCCGCTCCCACATGTATTGTGCTGTGTCTGAAGGCTGCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATc                                                                                                             <  8:76393/149‑1 (MQ=38)                      tgctgTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGc                                                                                                           >  5:70789/1‑149 (MQ=255)                        ctgTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCg                                                                                                         >  4:75067/1‑149 (MQ=255)                              aCTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCa                                                                                                   >  8:219937/1‑149 (MQ=255)                                   gCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCAcc                                                                                                 >  5:346634/1‑146 (MQ=255)                                   gCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCAcc                                                                                                 <  6:346634/146‑1 (MQ=255)                                    cTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCcgcg                                                                                             >  4:308552/1‑149 (MQ=255)                                       gCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCAt                                                                                          >  5:193147/1‑149 (MQ=255)                                                 GGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCt                                                                                <  6:193237‑M1/149‑1 (MQ=255)                                                     ATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCCCCCGCGCATCGTTCAGGCTGACg                                                                            <  8:27604‑M1/149‑1 (MQ=255)                                                      acgcccgctcccacaggtacagcgaagccttcagacacagcacaatacttgtgggagcgggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCa                                                                                    >  7:216513‑M2/75‑141 (MQ=255)                                                      acgcccgctcccacaggtacagcgaagccttcagacacagcacaatacttgtgggagcgggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCa                                                                                    <  8:216513‑M2/67‑1 (MQ=255)                                                       gCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGtt                                                                          >  3:286614/1‑149 (MQ=255)                                                         ccGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAGCCAGGCGCCGCAGTTTCAGGGCTGGAAcgc                                                                                                                          <  1:28024/100‑1 (MQ=255)                                                         ccGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAAcgc                                                                                                                          >  2:28024/1‑99 (MQ=255)                                                         ccGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTc                                                                         >  6:279051/1‑148 (MQ=255)                                                          ccgctcccacaggtacagcgaagccttcagacacagcacaatacttgtgggagcgggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTc                                                                         >  1:345957‑M2/71‑148 (MQ=255)                                                          cGCCCCCACATTTATTGGGCTGTGTCTCACGCCTTCGCTTTCCTTGGGGCCGGGGGGGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCa                                                                       <  8:56082/149‑1 (MQ=255)                                                             ctcccacaggtacagcgaagccttcagacacagcacaatacttgtgggagcgggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGt                                                                     <  2:345957‑M2/82‑1 (MQ=255)                                                               ccACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCa                                                                  >  4:263012/1‑149 (MQ=255)                                                               ccACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCa                                                                  >  8:158420/1‑149 (MQ=255)                                                                cacaAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCAt                                                                 <  5:193237/149‑1 (MQ=255)                                                                   aaGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGGAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCAtgtg                                                              >  1:287173/1‑149 (MQ=255)                                                                   aaGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCAtgtg                                                              >  8:327779/1‑149 (MQ=255)                                                                   aaGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCAtgtg                                                              >  3:315407/1‑149 (MQ=255)                                                                     gTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCg                                                            <  3:140173/149‑1 (MQ=255)                                                                     gTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCg                                                            >  3:42990/1‑149 (MQ=255)                                                                        acagcgaagccttcagacacagcacaatacttgtgggagcgggcgtgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGc                                                          >  4:162465‑M2/57‑149 (MQ=255)                                                                           tgCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCACgg                                                      >  5:311985/1‑149 (MQ=255)                                                                             cTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCa                                                                                                                                            >  7:295901/1‑61 (MQ=255)                                                                             cTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCa                                                                                                                                            <  8:295901/61‑1 (MQ=255)                                                                              aagccttcagacacagcacaatacttgtgggagcgggcgtgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGtt                                                    <  3:162465‑M2/99‑1 (MQ=255)                                                                                     gAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTgcccgccc                                            >  1:177083/1‑149 (MQ=255)                                                                                      aaGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGcccgcccg                                           >  5:197522/1‑149 (MQ=255)                                                                                        ggCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGAGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGACCGGTAgccagatcgc                                          >  8:272247/1‑141 (MQ=255)                                                                                        ggCTTCGCTGAACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGTTTgc                                                  <  7:272247/140‑1 (MQ=255)                                                                                          cTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCg                                       <  4:42990/149‑1 (MQ=255)                                                                                                  tACCTGTGGGTGCGGGCGTGCCGGCGGAT‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCTTGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCAc                                <  2:287173/148‑1 (MQ=255)                                                                                                    ccTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCAcgc                              <  3:75067/148‑1 (MQ=255)                                                                                                     cTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACgcgc                            >  7:241156/1‑149 (MQ=255)                                                                                                          ggAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGac                       <  5:279051/149‑1 (MQ=255)                                                                                                             gCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGaccac                    <  6:70789/149‑1 (MQ=255)                                                                                                                ggCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTc                 <  4:286614/149‑1 (MQ=255)                                                                                                                 ggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGac                       <  5:206931‑M2/128‑1 (MQ=255)                                                                                                                 ggcatgcccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGac                       >  6:206931‑M2/16‑143 (MQ=255)                                                                                                                   gTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGc               >  6:230607/1‑148 (MQ=255)                                                                                                                       cccgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCacg           >  5:229045‑M2/10‑149 (MQ=255)                                                                                                                         cgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGATAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCACGACCGGTCGAGCACTCGCGCCCGACGACATCGCCaggac         >  8:291299‑M2/8‑149 (MQ=255)                                                                                                                         cgcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCacgac         <  7:219937‑M2/142‑1 (MQ=255)                                                                                                                          gcgaagCAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCacgacg        <  6:193147‑M2/143‑1 (MQ=255)                                                                                                                                cAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCACGACGCAGTTg  <  7:327779/149‑1 (MQ=255)                                                                                                                                |                                                                                                                                                     GATGGCGCAACACAGTTGAACTGCTGTCGACTGTGCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAAGTATTGTGCTGTGTCTGAAGGCTTCGCTGTACCTGTGGGAGCGGGCGTGCCCGCGAAG‑CAGGCGCCGCAGTTTCAGGGCTGGAACGCGCCAATGAAAATCGCCGGGTCCACCCGCGCATCGTTCAGGCTGACGTTCCAGTGCATGTGCGGCCCGGTTGCCCGCCCGGTCGAGCCCACGCGCCCGACCACCTCGCCACGACGCAGTTG  >  NC_002947/1170702‑1170976

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.