New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1855815	42 (0.700)	3 (0.050)	3/256	NT	6.6%	coding (827/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855848	44 (0.760)					coding (860/1341 nt)	PP_1659	hypothetical protein

CGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCAT  >  NC_002947/1855669‑1855962                                                                                                                                                   |                                                                                                                                                    cGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGa                                                                                                                                                   >  7:223080/1‑149 (MQ=255)      tCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTc                                                                                                                                              <  6:263441/149‑1 (MQ=255)                    tACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCaa                                                                                                                                >  3:66184/1‑149 (MQ=255)                     acacCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTgc                                                                                                                                    >  1:341278/1‑144 (MQ=255)                     acacCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTgc                                                                                                                                    <  2:341278/144‑1 (MQ=255)                      cacCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCCCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACCTTCGAGCACGTGCGCAACg                                                                                                                              >  6:297098/1‑149 (MQ=255)                         ccccGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGc                                                                                                                           >  8:187449/1‑149 (MQ=255)                         ccccGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGc                                                                                                                           >  3:153803/1‑149 (MQ=255)                          cccGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGcc                                                                                                                          <  8:341523/149‑1 (MQ=255)                                  cGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAga                                                                                                                  >  1:214943‑M2/1‑147 (MQ=255)                                         ccGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCttttccggcacgttgcgcacgtgctcgaacgtcgaccatacc                                                                                                           <  1:221818‑M1/149‑43 (MQ=255)                                             aCAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAAt                                                                                                        >  8:263751/1‑148 (MQ=255)                                                aGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAAc                                                                                                    <  5:356396/149‑1 (MQ=255)                                                  cgggCGGGGAGCCCCGAGGCGTGCAATGCGCAGACGGTCCGGCGGGTACGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGGGGGTATGGGCGACGTTCCAGCACGTGCGCAACCTGCCGGTAAAGACCACGCCAATGAACGa                                                                                                  <  8:251981/148‑1 (MQ=255)                                                           aTCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgg                                                                                          <  4:66184/148‑1 (MQ=255)                                                             ccccGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGc                                                                                       >  3:60419/1‑149 (MQ=255)                                                                 gAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCttttccggcacgttgcgcacgtgctcgaacgtcgaccatac                                                                                                            <  4:13597‑M1/124‑42 (MQ=255)                                                                 gAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCttttccggcacgttgcgcacgtgctcgaacgtcgaccatac                                                                                                            >  3:13597‑M1/1‑83 (MQ=255)                                                                         cAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCaa                                                                                                         <  8:181987/119‑1 (MQ=255)                                                                         cAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCaa                                                                                                         >  7:181987/1‑119 (MQ=255)                                                                           aTGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTac                                                                         >  5:97343/1‑149 (MQ=255)                                                                               gcAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTacgacg                                                                     <  7:263751/149‑1 (MQ=255)                                                                               gcAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTacgacg                                                                     <  7:187449/149‑1 (MQ=255)                                                                                         gggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCa                                                            <  4:30538/148‑1 (MQ=255)                                                                                          ggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTc                                                                            >  3:349689/1‑131 (MQ=255)                                                                                          ggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTc                                                                            <  4:349689/131‑1 (MQ=255)                                                                                             tGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGAc                                                       >  5:320549/1‑149 (MQ=255)                                                                                               gTAGGCCTGCACATCGTCCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGAcc                                                      <  8:223080/148‑1 (MQ=255)                                                                                                   gCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgggg                                                                                        >  8:99999/1‑110 (MQ=255)                                                                                                   gCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgggg                                                                                        <  7:99999/110‑1 (MQ=255)                                                                                                    ccTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCgg                                                >  5:46984/1‑149 (MQ=255)                                                                                                     cTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGt                                               <  6:97343/149‑1 (MQ=255)                                                                                                           aTCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGa                                         <  6:320549/149‑1 (MQ=255)                                                                                                               tGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAgccg                                     <  1:326662/149‑1 (MQ=255)                                                                                                                gCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAgccgc                                    >  3:152307/1‑149 (MQ=255)                                                                                                                    aaGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccgc                                >  1:333114/1‑149 (MQ=255)                                                                                                                    aaGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccgc                                >  7:286069/1‑149 (MQ=255)                                                                                                                       aCCGAAGGCGCACCTCCGTGGGTATGGTCGACGTTCGAGCCCGGGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccg                                 <  4:66211/145‑1 (MQ=255)                                                                                                                       aCCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccg                                 >  3:66211/1‑145 (MQ=255)                                                                                                                         cGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCAc                           >  2:182461/1‑149 (MQ=255)                                                                                                                              gcgcACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGGGCAAGGGGCCCTACCTGTTCTACCACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTgg                      >  7:107390/1‑149 (MQ=255)                                                                                                                                 cACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGAc                   <  2:124575/149‑1 (MQ=255)                                                                                                                                       aGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTc              <  1:226785/148‑1 (MQ=255)                                                                                                                                         tGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCg             >  6:24778/1‑147 (MQ=255)                                                                                                                                           ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcgg         <  1:221818‑M2/149‑108 (MQ=255)                                                                                                                                           ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAg                                                                                           <  3:263062/67‑1 (MQ=255)                                                                                                                                           ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAg                                                                                           >  4:263062/1‑67 (MQ=255)                                                                                                                                            gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactc                                 <  4:13597‑M2/124‑84 (MQ=255)                                                                                                                                            gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactc                                 >  3:13597‑M2/1‑41 (MQ=255)                                                                                                                                            gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCgaagaa        <  2:333114/149‑1 (MQ=255)                                                                                                                                               tGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAgg      <  6:46984/148‑1 (MQ=255)                                                                                                                                                  tCttttccggcacgttgcgcacgtgctcgaacgtcgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcgggtcggcg  >  1:214943‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGCCGTCGACGCGCTGGTCTACACCCCCGGCAACGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCAT  >  NC_002947/1855669‑1855962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.