New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1855815	42 (0.700)	3 (0.050)	3/256	NT	6.6%	coding (827/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	= 1855848	44 (0.760)					coding (860/1341 nt)	PP_1659	hypothetical protein

CGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTCCC  >  NC_002947/1855702‑1855990                                                                                                                                                   |                                                                                                                                               cGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAga                                                                                                                                              >  1:214943‑M2/1‑147 (MQ=255)            aCAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAAt                                                                                                                                    >  8:263751/1‑148 (MQ=255)               aGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAAc                                                                                                                                <  5:356396/149‑1 (MQ=255)                 cgggCGGGGAGCCCCGAGGCGTGCAATGCGCAGACGGTCCGGCGGGTACGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGGGGGTATGGGCGACGTTCCAGCACGTGCGCAACCTGCCGGTAAAGACCACGCCAATGAACGa                                                                                                                              <  8:251981/148‑1 (MQ=255)                          aTCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgg                                                                                                                      <  4:66184/148‑1 (MQ=255)                            ccccGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGc                                                                                                                   >  3:60419/1‑149 (MQ=255)                                        cAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCaa                                                                                                                                     >  7:181987/1‑119 (MQ=255)                                        cAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCaa                                                                                                                                     <  8:181987/119‑1 (MQ=255)                                          aTGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTac                                                                                                     >  5:97343/1‑149 (MQ=255)                                              gcAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTacgacg                                                                                                 <  7:263751/149‑1 (MQ=255)                                              gcAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTacgacg                                                                                                 <  7:187449/149‑1 (MQ=255)                                                        gggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCa                                                                                        <  4:30538/148‑1 (MQ=255)                                                         ggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTc                                                                                                        >  3:349689/1‑131 (MQ=255)                                                         ggCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTc                                                                                                        <  4:349689/131‑1 (MQ=255)                                                            tGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGAc                                                                                   >  5:320549/1‑149 (MQ=255)                                                              gTAGGCCTGCACATCGTCCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGAcc                                                                                  <  8:223080/148‑1 (MQ=255)                                                                  gCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgggg                                                                                                                    >  8:99999/1‑110 (MQ=255)                                                                  gCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAgggg                                                                                                                    <  7:99999/110‑1 (MQ=255)                                                                   ccTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCgg                                                                            >  5:46984/1‑149 (MQ=255)                                                                    cTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGt                                                                           <  6:97343/149‑1 (MQ=255)                                                                          aTCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGa                                                                     <  6:320549/149‑1 (MQ=255)                                                                              tGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAgccg                                                                 <  1:326662/149‑1 (MQ=255)                                                                               gCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAgccgc                                                                >  3:152307/1‑149 (MQ=255)                                                                                   aaGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccgc                                                            >  7:286069/1‑149 (MQ=255)                                                                                   aaGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccgc                                                            >  1:333114/1‑149 (MQ=255)                                                                                      aCCGAAGGCGCACCTCCGTGGGTATGGTCGACGTTCGAGCCCGGGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccg                                                             <  4:66211/145‑1 (MQ=255)                                                                                      aCCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGccgcccg                                                             >  3:66211/1‑145 (MQ=255)                                                                                        cGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCAc                                                       >  2:182461/1‑149 (MQ=255)                                                                                             gcgcACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGGGCAAGGGGCCCTACCTGTTCTACCACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTgg                                                  >  7:107390/1‑149 (MQ=255)                                                                                                cACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGAc                                               <  2:124575/149‑1 (MQ=255)                                                                                                      aGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTc                                          <  1:226785/148‑1 (MQ=255)                                                                                                        tGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCg                                         >  6:24778/1‑147 (MQ=255)                                                                                                          ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactcggggatcaccgcccccttgttcgg                                     <  1:221818‑M2/149‑108 (MQ=255)                                                                                                          ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAg                                                                                                                       <  3:263062/67‑1 (MQ=255)                                                                                                          ggTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAg                                                                                                                       >  4:263062/1‑67 (MQ=255)                                                                                                           gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactc                                                             <  4:13597‑M2/124‑84 (MQ=255)                                                                                                           gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAgaccatacccactgaggtgcgccttcggtcttgtgcacgatgtgcaggcctaccagcccgaccttctgcgcattgcacgactc                                                             >  3:13597‑M2/1‑41 (MQ=255)                                                                                                           gTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCgaagaa                                    <  2:333114/149‑1 (MQ=255)                                                                                                              tGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAgg                                  <  6:46984/148‑1 (MQ=255)                                                                                                                   gACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATcc                            <  4:60419/149‑1 (MQ=255)                                                                                                                       ttCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTc                        <  3:258139/149‑1 (MQ=255)                                                                                                                       ttCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGACCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTc                        >  5:119472/1‑149 (MQ=255)                                                                                                                                  gcgcAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATcgtgc             >  1:15463/1‑149 (MQ=255)                                                                                                                                  gcgcAACGTGCCGGAAAAGACCACGACAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGCTGAACGAGCAGCCCGCGCCACCGTGGTACCCGTCGAAGAAGGCCATCCCCTCGCAGATcgtgc             >  7:233912/1‑149 (MQ=255)                                                                                                                                   cgcAACGTGCCGGAAAAGACCACGCCAATGAAGGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATcgtgc             <  8:286069/148‑1 (MQ=255)                                                                                                                                   cgcAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATcgtgcg            >  3:255814/1‑149 (MQ=255)                                                                                                                                        cGTGCCGGAAAAGACCACGCCAATGAACGTGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGaaa       <  5:297098/149‑1 (MQ=255)                                                                                                                                             cGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTccc  <  4:153803/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                               CGCCGACCCGAACAAGGGGGCGGTGATCCCCGAGTCGTGCAATGCGCAGAAGGTCGGGCTGGTAGGCCTGCACATCGTGCACAAGACCGAAGGCGCACCTCAGTGGGTATGGTCGACGTTCGAGCACGTGCGCAACGTGCCGGAAAAGACCACGCCAATGAACGAGCGCAAGGGGCCCTACCTGTTCTACGACGCCCAGGCCAGCGACCGCCCGGTGAACGAGCCGCCCGCGCCACCGTGGGACCCGTCGAAGAAGGCCATCCCCTCGCAGATCGTGCGTGAAATTCCC  >  NC_002947/1855702‑1855990

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.