New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2839904	36 (0.600)	3 (0.050)	3/250	NT	7.8%	coding (678/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2839944	37 (0.650)					coding (638/678 nt)	PP_2491	ThiJ/PfpI family protein

CCAACACCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCG  >  NC_002947/2839756‑2840051                                                                                                                                                     |                                                                                                                                                     ccAACACCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCT                                                                                                                                                      >  7:130350‑M1/1‑149 (MQ=255) ccAACACCTCCAGCTGCCCGCAGACAGCCAGCCGGGGGCCCGCGTGCCCTTCTCGTGCGGGAGGCGCCTCCTGCGCGTAACGGTGCCGGTCAGCAGCGTCGCTGGTGTGCGCGCGGGTGAAAACCACGTAGGCGGACATCGGGcctcct                                                                                                                                                      <  4:290855/149‑1 (MQ=255)   aaCACCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCT                                                                                                                                                      >  3:94913‑M1/1‑147 (MQ=255)    acacCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAg                                                                                                                                                   >  4:142253/1‑149 (MQ=255)    acacCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAg                                                                                                                                                   <  8:130350/149‑1 (MQ=255)       ccTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCt                                                                                                                                                 >  3:162618/1‑148 (MQ=255)       ccTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGGCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTc                                                                                                                                                <  2:126599/149‑1 (MQ=255)        cTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCa                                                                                                                                               <  1:350187/149‑1 (MQ=255)         tCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAg                                                                                                                                              >  1:59099/1‑149 (MQ=255)                gACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGtt                                                                                                                                        <  6:65328/148‑1 (MQ=255)                    gTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGagca                                                                                                                                   <  8:201319/149‑1 (MQ=255)                    gTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGagca                                                                                                                                   <  3:362402/149‑1 (MQ=255)                    gTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGag                                                                                                                                     >  1:206012/1‑147 (MQ=255)                        aaaGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTa                                                                                                                                                    >  2:196040/1‑128 (MQ=255)                        aaaGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTa                                                                                                                                                    <  1:196040/128‑1 (MQ=255)                          aGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACg                                                                                                                                          >  4:294590/1‑136 (MQ=255)                          aGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACg                                                                                                                                          <  3:294590/136‑1 (MQ=255)                                       aCGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTc                                                                                                                >  5:24003/1‑149 (MQ=255)                                          tCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGa                                                                                                             >  4:94913‑M2/1‑148 (MQ=255)                                                 cTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTccgaagccaccgcccacgcgctgctcaacgtgctgagctaaggaggcc                                                                                                      <  5:351839‑M1/149‑49 (MQ=255)                                                   tctcGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCgg                                                                                                    >  8:189321/1‑149 (MQ=255)                                                    ctcGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCgg                                                                                                    <  1:371779/148‑1 (MQ=255)                                                         gCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTg                                                                                              <  5:51844/149‑1 (MQ=255)                                                                     tcctGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATcag                                                                                  >  8:78795/1‑149 (MQ=255)                                                                                  gTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTccgaagccaccgcccacgcgctgctcaacgtgctgagctaaggaggccc                                                                                                     <  8:262926‑M1/117‑50 (MQ=255)                                                                                  gTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTccgaagccaccgcccacgcgctgctcaacgtgctgagctaaggaggccc                                                                                                     >  7:262926‑M1/1‑68 (MQ=255)                                                                                  gTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                      >  2:110889/1‑148 (MQ=255)                                                                                      cccttCAGCAGCGTCGGGTGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGGGGGCGGTGGCTTCGGACGAGGCCGGGTTCTGGCCCGTGATCACCAGCCCGTCGGtgaag                                                                  <  6:19742/145‑3 (MQ=255)                                                                                              cagcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTAcc                                                         >  5:53188/1‑149 (MQ=255)                                                                                              cagcGTAGGGGCTGTGCTCGCTGGTGAAAACCACGTAGGCGAACATCGGGCCTCCTTAGCTCAGCACGTTCAGCAGCCCGTGGGCGGACGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCACCAGCCCGTCGGTGATGACATGTAca                                                         >  4:2283/1‑148 (MQ=255)                                                                                                gcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACTTCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTg                                                       <  7:78795/149‑1 (MQ=255)                                                                                                         gtgtGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggc                                              <  3:142253/149‑1 (MQ=255)                                                                                                          tgtgCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggcg                                             <  2:206012/149‑1 (MQ=255)                                                                                                           gtgCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggcgg                                            >  1:34152/1‑149 (MQ=255)                                                                                                              cTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGGGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                      <  8:62101/120‑1 (MQ=255)                                                                                                              cTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGGGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                      >  7:62101/1‑120 (MQ=255)                                                                                                               tCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCtt                                        >  2:28467/1‑149 (MQ=255)                                                                                                                 gcgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTg                                       <  6:24003/148‑1 (MQ=255)                                                                                                                 gcgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGc                                      >  5:108745/1‑149 (MQ=255)                                                                                                                  cgGGTGTAAACCACGTAGGCGGAGATCGGGCGTCCTTAGCTCAGGACGTTGAGCAGCGCGTGGGCGGTGGCTTAGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCGCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCt                                     <  5:123904/149‑1 (MQ=255)                                                                                                                      tGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑Ag                                <  7:189321/149‑1 (MQ=255)                                                                                                                          aaCCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCg                                                                        >  3:360003/1‑106 (MQ=255)                                                                                                                          aaCCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCg                                                                        <  4:360003/106‑1 (MQ=255)                                                                                                                                 tAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCt                      >  8:194579/1‑148 (MQ=255)                                                                                                                                   ggCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGa                    <  1:110889/148‑1 (MQ=255)                                                                                                                                           tggggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGTGTTCTTGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGc           <  3:2283/147‑1 (MQ=255)                                                                                                                                            cGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTGCCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCa          >  1:344343/1‑149 (MQ=255)                                                                                                                                             gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaac                                          >  7:262926‑M2/1‑49 (MQ=255)                                                                                                                                             gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaac                                          <  8:262926‑M2/117‑69 (MQ=255)                                                                                                                                             gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCa          <  4:162618/148‑1 (MQ=255)                                                                                                                                              ggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgagaag         <  5:351839‑M2/149‑102 (MQ=255)                                                                                                                                                    ctTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGTAGGAGGCCGGGTTCTGGCCCGTGAACAGCAGACCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTc   >  7:332552/1‑148 (MQ=255)                                                                                                                                                    ctTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTCAGTGGCCGCCCTGAGCCTTGAGCATGTcc     <  1:28467/147‑1 (MQ=255)                                                                                                                                                     ttAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGGCCGTGATCAGCAGCCCGTCGGTGATGACATGTa                                                           <  1:353010/92‑1 (MQ=255)                                                                                                                                                     ttAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTCATGAGATGTa                                                           >  2:353010/1‑92 (MQ=255)                                                                                                                                                     tccgaagccaccgcccacgcgctgctcaacgtgctgagctaaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgagaagggcacga  >  4:94913‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     CCAACACCTCCAGTTGACCGTAGAAAGCCAGACGTGTGACGTCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCG  >  NC_002947/2839756‑2840051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.