New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2839904	36 (0.600)	3 (0.050)	3/250	NT	7.8%	coding (678/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2839944	37 (0.650)					coding (638/678 nt)	PP_2491	ThiJ/PfpI family protein

TCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCCTACAGCCT  >  NC_002947/2839797‑2840088                                                                                                                                                    |                                                                                                                                                  tCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGa                                                                                                                                                  >  4:94913‑M2/1‑148 (MQ=255)          tctcGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCgg                                                                                                                                         >  8:189321/1‑149 (MQ=255)           ctcGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCgg                                                                                                                                         <  1:371779/148‑1 (MQ=255)                gCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTg                                                                                                                                   <  5:51844/149‑1 (MQ=255)                            tcctGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATcag                                                                                                                       >  8:78795/1‑149 (MQ=255)                                         gTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                                                           >  2:110889/1‑148 (MQ=255)                                             cccttCAGCAGCGTCGGGTGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGGGGGCGGTGGCTTCGGACGAGGCCGGGTTCTGGCCCGTGATCACCAGCCCGTCGGtgaag                                                                                                       <  6:19742/145‑3 (MQ=255)                                                     cagcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTAcc                                                                                              >  5:53188/1‑149 (MQ=255)                                                     cagcGTAGGGGCTGTGCTCGCTGGTGAAAACCACGTAGGCGAACATCGGGCCTCCTTAGCTCAGCACGTTCAGCAGCCCGTGGGCGGACGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCACCAGCCCGTCGGTGATGACATGTAca                                                                                              >  4:2283/1‑148 (MQ=255)                                                       gcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACTTCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTg                                                                                            <  7:78795/149‑1 (MQ=255)                                                                gtgtGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggc                                                                                   <  3:142253/149‑1 (MQ=255)                                                                 tgtgCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggcg                                                                                  <  2:206012/149‑1 (MQ=255)                                                                  gtgCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggcgg                                                                                 >  1:34152/1‑149 (MQ=255)                                                                     cTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGGGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                                                           >  7:62101/1‑120 (MQ=255)                                                                     cTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGGGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGt                                                                                                           <  8:62101/120‑1 (MQ=255)                                                                      tCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCtt                                                                             >  2:28467/1‑149 (MQ=255)                                                                        gcgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTg                                                                            <  6:24003/148‑1 (MQ=255)                                                                        gcgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGc                                                                           >  5:108745/1‑149 (MQ=255)                                                                         cgGGTGTAAACCACGTAGGCGGAGATCGGGCGTCCTTAGCTCAGGACGTTGAGCAGCGCGTGGGCGGTGGCTTAGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCGCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCt                                                                          <  5:123904/149‑1 (MQ=255)                                                                             tGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑Ag                                                                     <  7:189321/149‑1 (MQ=255)                                                                                 aaCCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCg                                                                                                             <  4:360003/106‑1 (MQ=255)                                                                                 aaCCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCg                                                                                                             >  3:360003/1‑106 (MQ=255)                                                                                        tAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCt                                                           >  8:194579/1‑148 (MQ=255)                                                                                          ggCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGa                                                         <  1:110889/148‑1 (MQ=255)                                                                                                  tggggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGTGTTCTTGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGc                                                <  3:2283/147‑1 (MQ=255)                                                                                                   cGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTGCCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCa                                               >  1:344343/1‑149 (MQ=255)                                                                                                    gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaac                                                                               <  8:262926‑M2/117‑69 (MQ=255)                                                                                                    gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaac                                                                               >  7:262926‑M2/1‑49 (MQ=255)                                                                                                    gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCa                                               <  4:162618/148‑1 (MQ=255)                                                                                                     ggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgagaag                                              <  5:351839‑M2/149‑102 (MQ=255)                                                                                                           ctTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGTAGGAGGCCGGGTTCTGGCCCGTGAACAGCAGACCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTc                                        >  7:332552/1‑148 (MQ=255)                                                                                                           ctTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTCAGTGGCCGCCCTGAGCCTTGAGCATGTcc                                          <  1:28467/147‑1 (MQ=255)                                                                                                            ttAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGGCCGTGATCAGCAGCCCGTCGGTGATGACATGTa                                                                                                <  1:353010/92‑1 (MQ=255)                                                                                                            ttAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTCATGAGATGTa                                                                                                >  2:353010/1‑92 (MQ=255)                                                                                                               gCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTACTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGAc                                     >  7:311154/1‑147 (MQ=255)                                                                                                                 tCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGa                                                         >  6:205708/1‑125 (MQ=255)                                                                                                                 tCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGa                                                         <  5:205708/125‑1 (MQ=255)                                                                                                                  cAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAgg                                 >  5:308613/1‑148 (MQ=255)                                                                                                                    gCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAAc                              >  4:113070/1‑149 (MQ=255)                                                                                                                        gTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGca                          >  2:319554/1‑149 (MQ=255)                                                                                                                               agcGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTg                   >  1:325156/1‑149 (MQ=255)                                                                                                                                    gTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGt                >  6:372449/1‑147 (MQ=255)                                                                                                                                              tcTTCGGATGAGGCCGGGTTCTTGCCCGTGATCAGAAGGCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTGTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCCTACAGc    <  8:332552/148‑1 (MQ=255)                                                                                                                                                ttCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCAt                                              <  3:40323/105‑1 (MQ=255)                                                                                                                                                ttCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTg                   >  7:236016/1‑132 (MQ=255)                                                                                                                                                ttCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCCTACAGcct  >  7:177187/1‑149 (MQ=255)                                                                                                                                                ttCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCCTACAGcct  >  3:141951/1‑149 (MQ=255)                                                                                                                                                ttCGCATGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGACGGTGATGACATGTACCTCCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGAACTGAGCCTTGAGCAt                                              >  4:40323/1‑105 (MQ=255)                                                                                                                                                    |                                                                                                                                                  TCGTGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGT‑AGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCCTACAGCCT  >  NC_002947/2839797‑2840088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.