New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2897461 =	42 (0.700)	3 (0.050)	3/254	NT	6.5%	coding (780/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897534 =	46 (0.800)					coding (853/945 nt)	PP_2551	LysR family transcriptional regulator

CCGGCACTTGCGTGCACAGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGG  >  NC_002947/2897314‑2897607                                                                                                                                                    |                                                                                                                                                   ccccagtctaggcacctatccccagccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgccgactggcgccacaactcgaatacccggttacgcaaccagcggtgctcggccgag                                                                                                                                                    >  1:97311‑M1/148‑148 (MQ=255) ccGGCACTTGCGTGCACAGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGAcctgg                                                                                                                                                   >  6:90639/1‑149 (MQ=255) ccGGCACTTGCGTGCACAGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTATTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGGTTGCATGAcctgg                                                                                                                                                   >  7:164262/1‑149 (MQ=255)  ccccagtctaggcacctatccccagccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaaccagcggtgctcggccgaGGc                                                                                                                                                  <  5:335545‑M1/3‑1 (MQ=255)  cGGCAATAGCGTGCACAGGGCCTGCAGCGGCGGGTCCGCCTCGAAGTGCCGTTCTTCTGAGCCACGGTACATGTGATTGCCGGCAGTCAGGCCGTGGCCACGGTCCCAGAGCACCTCGCCCGGCAACTGAGACGTTTGGATGAcctggc                                                                                                                                                  >  2:231298/1‑149 (MQ=255)   cccagtctaggcacctatccccagccgaataccctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccccaactcgattacccggttacgcaaccagcggtgctcggccgaGGcc                                                                                                                                                 <  3:20504‑M1/4‑1 (MQ=255)              gCACAGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACt                                                                                                                                      >  4:38460/1‑149 (MQ=255)               cacaGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTg                                                                                                                                     >  4:18280/1‑149 (MQ=255)                      ccTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCa                                                                                                                              <  3:222633/149‑1 (MQ=255)                          cAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGa                                                                                                                          <  3:38460/149‑1 (MQ=255)                           aGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGAc                                                                                                                         <  4:59532/149‑1 (MQ=255)                           aGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGAc                                                                                                                         <  4:118289/149‑1 (MQ=255)                               gcggGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACcaca                                                                                                                     <  7:149560/149‑1 (MQ=255)                                   gTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTggg                                                                                                                                   >  5:275699/1‑131 (MQ=255)                                   gTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTggg                                                                                                                                   <  6:275699/131‑1 (MQ=255)                                            gAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTAc                                                                                                          <  6:237998/147‑1 (MQ=255)                                                 gCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCg                                                                                                   >  3:175178/1‑149 (MQ=255)                                                 gCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCg                                                                                                   >  8:17879/1‑149 (MQ=255)                                                   cGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCgtg                                                                                                 <  3:284095/149‑1 (MQ=255)                                                     ttcttcTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTAGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGCCCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGtgtg                                                                                               >  8:316332/1‑149 (MQ=255)                                                       ctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaaccagcggtgctcggccgaGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTgg                                                                                              <  2:84887‑M1/55‑1 (MQ=255)                                                            gcgcCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATc                                                                                                                            >  3:225947/1‑113 (MQ=255)                                                            gcgcCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATc                                                                                                                            <  4:225947/113‑1 (MQ=255)                                                                   ggTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTg                                                                                  >  1:286234/1‑148 (MQ=255)                                                                        aaGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGcc                                                                            <  3:18280/149‑1 (MQ=255)                                                                          gTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTc                                                                          >  2:100933/1‑149 (MQ=255)                                                                           cgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaaccagcggtgctcggccgaGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTc                                                                          >  4:232684‑M1/74‑148 (MQ=255)                                                                            gccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaaccagcggtgctcggccgaGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCgg                                                                        >  1:84887‑M1/73‑149 (MQ=255)                                                                             aTTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGc                                                                       <  6:286307/149‑1 (MQ=255)                                                                                    gcagTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCAc                                                                <  7:46882/149‑1 (MQ=255)                                                                                       gTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGc                                                             >  4:255233/1‑149 (MQ=255)                                                                                       gTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGc                                                             >  3:248639/1‑149 (MQ=255)                                                                                          aGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTg                                                           <  5:270344/148‑1 (MQ=255)                                                                                            gCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                        >  2:260186/1‑149 (MQ=255)                                                                                              cGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGc                                                      <  1:100933/149‑1 (MQ=255)                                                                                                   ccACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGTCCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                        >  1:263885/1‑142 (MQ=255)                                                                                                   ccACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                        <  2:263885/142‑1 (MQ=255)                                                                                                    cACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAg                                                                               <  5:259086/118‑1 (MQ=255)                                                                                                    cACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAg                                                                               >  6:259086/1‑118 (MQ=255)                                                                                                    cACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAAcc                                                >  3:100002/1‑149 (MQ=255)                                                                                                            ccGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTc                                        >  8:27903/1‑149 (MQ=255)                                                                                                                    aTCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTc                                                                                                                               <  5:198300/54‑1 (MQ=255)                                                                                                                    aTCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTc                                                                                                                               >  6:198300/1‑54 (MQ=255)                                                                                                                          cGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTGATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCTCCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCa                          <  1:231298/149‑1 (MQ=255)                                                                                                                            gCAACTGAGCCGCTTTCATGACCTGGCCTGGCGACGACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGt                        <  8:164262/149‑1 (MQ=255)                                                                                                                             cAACTGAGCCGTTTGCATGACCTGGCCTGGCGCCCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGGATTCGAGTTGTGGCGGCAGTc                       >  3:157949/1‑149 (MQ=255)                                                                                                                                cTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCa                    <  7:17879/149‑1 (MQ=255)                                                                                                                                  gAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGt                  >  5:322374/1‑149 (MQ=255)                                                                                                                                           ggaTGACCTGGCCAGGCGATCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTg          <  6:98047/146‑1 (MQ=255)                                                                                                                                            cATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTg          >  3:84839/1‑147 (MQ=255)                                                                                                                                            cATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTg          >  4:291715/1‑147 (MQ=255)                                                                                                                                                  ctggcctggcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAgggcgg  >  6:335545/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   CCGGCACTTGCGTGCACAGGGCCTGCAGCGGCGGGTCAGCCTGGAAGTGCCGTTCTTCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGG  >  NC_002947/2897314‑2897607

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.