New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2954393	46 (0.760)	4 (0.070)	4/252	NT	8.1%	coding (105/1383 nt)	PP_2586	putative amino acid transporter
	?	NC_002947	= 2954428	47 (0.830)					coding (70/1383 nt)	PP_2586	putative amino acid transporter

CCGTAACTGTAGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCG  >  NC_002947/2954253‑2954538                                                                                                                                             |                                                                                                                                                  ccGTAACTGTAGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCGCCATGTAGGCCAGGCCAAACAGCACCAGGGCGGt                                                                                                                                           <  5:336558/149‑1 (MQ=255)  cGTAACTGTAGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTc                                                                                                                                          <  1:236931/149‑1 (MQ=255)           aGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCggccgcttccgcaagtc                                                                                                                                  >  4:218965‑M1/1‑131 (MQ=255)           aGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATg                                                                                                                                 >  1:278148/1‑149 (MQ=255)            ggCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATg                                                                                                                                 >  5:366502/1‑148 (MQ=255)                       gcaTGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAg                                                                                                                     >  8:56073/1‑149 (MQ=255)                          tGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAAAACGGCCAGGGGCACCATGAAGGCCAGGCCAAACAGCACCAGGCCGGTCATGCTCATGGACTTGCGGAAGCgg                                                                                                                  >  8:281817/1‑149 (MQ=255)                                cgAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtg                                                                                                            >  6:248916‑M2/1‑145 (MQ=255)                                     gTGAGCAGGGAGGCTGTGGGCTGGTGGCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACTGCCAGGGGCAACATGTATGCCAGGCCAAACAGCACCggccgcttccgcaagtccatgagcatgaccgccctggtggtgtt                                                                                                       <  4:132039‑M1/149‑45 (MQ=255)                                      tGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCggccgcttccgcaagtccatgagcatgaccgccctggtgctgttt                                                                                                      <  3:218965‑M1/149‑46 (MQ=255)                                      tGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGc                                                                                                                          <  1:338533/129‑1 (MQ=255)                                      tGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGc                                                                                                                          >  2:338533/1‑129 (MQ=255)                                      tGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTg                                                                                                      >  3:189069/1‑149 (MQ=255)                                        aGCAGGTAGGGGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGATTACGGCAAGGGGCACCATGTAGGCCAGGCCAAACAGCACCggccgcttccgcaagtccatgagcatgaccgccctggtgctgtttg                                                                                                     <  5:5212‑M1/148‑47 (MQ=255)                                          cAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCgg                                                                                                  >  3:106451/1‑149 (MQ=255)                                           aGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCGCGTAGGTGGTGAATACCGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACATGCGGAAGCGGCCGGTGCTGGTGCCggg                                                                                                 <  1:211986/149‑1 (MQ=255)                                              tAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACACCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTg                                                                                              <  6:73920/149‑1 (MQ=255)                                                  cGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAg                                                                                          <  8:91644/149‑1 (MQ=255)                                                    gTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAggg                                                                                        <  4:189069/149‑1 (MQ=255)                                                            gTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcg                                                                                >  1:136216/1‑149 (MQ=255)                                                            gTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcg                                                                                >  7:116173/1‑149 (MQ=255)                                                             tGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcgg                                                                               <  6:366502/149‑1 (MQ=255)                                                             tGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcgg                                                                               >  5:238986/1‑149 (MQ=255)                                                              gCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcggg                                                                              >  1:103666/1‑149 (MQ=255)                                                                    tGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATgcggggcggg                                                                         <  2:103666/148‑1 (MQ=255)                                                                     ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                        <  8:16499/148‑1 (MQ=255)                                                                     ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                        <  4:106451/148‑1 (MQ=255)                                                                     ggTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGcggggcgggg                                                                        <  2:136216/148‑1 (MQ=255)                                                                      gTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCggggcggggc                                                                       >  4:312308/1‑148 (MQ=255)                                                                        cATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTAt                                                                    >  3:168650/1‑149 (MQ=255)                                                                               gTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCAGGGACTAGCGGAAGCGGCCGGTGCTGGTGCCGCGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGcag                                                              >  2:297543/1‑146 (MQ=255)                                                                                     aGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCGAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTa                                                            <  8:199051/144‑1 (MQ=255)                                                                                     aGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTa                                                            >  7:199051/1‑144 (MQ=255)                                                                                      gCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgtt                                                      <  2:341199/149‑1 (MQ=255)                                                                                      gCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgtt                                                      <  7:173217/149‑1 (MQ=255)                                                                                         cGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgttgtt                                                   <  8:116173/149‑1 (MQ=255)                                                                                         cGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACttgttgtt                                                   >  6:317080/1‑149 (MQ=255)                                                                                           tAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCGAGGCCAAAGAGCACCAGGGCGGTCATGCTCATGGACTTGCGTTTGCTGCCGGTTCTGGTGCCGGGTTGCGAGGGTGCATGGGGGGCGGGGCTATGGGCTGTACTttttgttgt                                                 <  7:281817/149‑1 (MQ=255)                                                                                               tggtgAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTAt                                               >  8:158373/1‑147 (MQ=255)                                                                                               tggtgAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTAt                                               <  7:158373/147‑1 (MQ=255)                                                                                                   gAATACGGACAGGGGAACCATTTAGGCCAGTCCAAACAGAAAAAGGGCGGTCATGATAATTGACTTGCGGAAGCTGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTg                                         >  3:172097/1‑149 (MQ=255)                                                                                                    atttcgtccAGGGGCACCATGTTGGCCAGGCAAAACAGCACCTGGGCGGTCATGCTCATGGAGTTGCGGTAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGGGGGGCGGGGCTATGGGCTGTAGTTGTTGTTGTTTGCATTg                                         <  2:186740/141‑1 (MQ=255)                                                                                                     aTACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCt                                       <  6:238986/149‑1 (MQ=255)                                                                                                                 gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGGATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaaaa                           <  6:312652/149‑1 (MQ=255)                                                                                                                 gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaaaa                           <  3:312308/149‑1 (MQ=255)                                                                                                                 gCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGaa                             >  5:119319/1‑147 (MQ=255)                                                                                                                       tGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATg                     >  1:333327/1‑149 (MQ=255)                                                                                                                         tAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCa                   <  2:278148/149‑1 (MQ=255)                                                                                                                                 gccaCACAGCCCCAGGGCGGTCATGCGCCTGGACTTGCGGAAGCGGCCGGGGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcg           <  4:172097/149‑1 (MQ=255)                                                                                                                                  ccaAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcgc          >  8:47683/1‑149 (MQ=255)                                                                                                                                   caAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcctacatggtgccccttgccgtaatcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccccctacctgct          <  5:5212‑M2/148‑103 (MQ=255)                                                                                                                                   caAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACcgcg         >  2:363088/1‑149 (MQ=255)                                                                                                                                    aaaCAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcctacatggtgcccctggccgtattcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccgcctacctgctca        <  3:218965‑M2/149‑105 (MQ=255)                                                                                                                                     aaCACCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCggtgctgtttggcctggcatacatgttgcccctggcagtattcaccacctacgggctggtcacccagatgaccaaaggccaccagcccacagcctccctgctcac       <  4:132039‑M2/149‑106 (MQ=255)                                                                                                                                          cACCggccgcttccgcaagtccatgagcatgaccgccctggtgctgtttggcctggcctacatggtgcccctggccgtattcaccacctacgggctggtcacccagatgaccaaagggcacctgcccaccgcctacctgctcacgctcg  >  6:248916‑M1/1‑4 (MQ=255)                                                                                                                                             |                                                                                                                                                  CCGTAACTGTAGGCGGTCAGCAGCATGGCGGCGAGCGTGAGCAGGTAGGCGGTGGGCAGGTGCCCTTTGGTCATCTGGGTGACCAGCCCGTAGGTGGTGAATACGGCCAGGGGCACCATGTAGGCCAGGCCAAACAGCACCAGGGCGGTCATGCTCATGGACTTGCGGAAGCGGCCGGTGCTGGTGCCGGGTTGCGAGGGTGCATGCGGGGCGGGGCTATGGGCTGTACTTGTTGTTGTATGCATTGCTAACTCCTGAAAAGGGATGCAGGACACCGCGGCAGGCG  >  NC_002947/2954253‑2954538

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.